A routine for solving sparse systems in structural analysis

A computer subprogram for the direct in-core solution of large symmetric systems of linear algebraic equations is presented. The procedure employs a sparse matrix technique and allows for symmetrical pivoting and reordering to improve numerical stability and reduce core allocation. The work is especially oriented to problems deriving from minimum or stationary principles in structural analysis. A FORTRAN print-out of the complete package is given in the Appendix.     

Genomic and proteomic identification of a DNA-binding protein used in the "fingerprinting" of campylobacter species and strains by MALDI-TOF-MS protein biomarker analysis

We have identified a prominent approximately 10-kDa protein biomarker observed in the matrix-assisted laser desorption/ionization time-of-flight mass spectra (MALDI-TOF-MS) of cell lysates of five thermophilic species of Campylobacter: jejuni, coli, lari, upsaliensis, and helveticus. The biomarker was unambiguously identified by genomic and proteomic sequencing as a DNA-binding protein HU. We report the amino acid sequence of HU as determined by sequencing the hup gene of four species (12 strains): C. jejuni (2), C. coli (4), C. upsaliensis (4) and C. lari(2). Confirmation of the amino acid sequence was obtained by nanoflow high-performance liquid chromatography-tandem mass spectrometry of the tryptic peptides of the extracted/digested HU protein. Protein identification was also confirmed by comparison of the molecular weight (MW) predicted from the hup gene and the MW of HU as measured by high-resolution mass spectrometry. We found the HU protein to be particularly useful as a biomarker in that it strongly ionizes by MALDI and its MW varies between species and among strains within a species. Intra- and interspecies variation of the HU MW is due to changes in the amino acid sequence of the HU protein and not due to co- or posttranslational modifications. The strong ionization efficiency of HU by MALDI is likely due, in part, to four lysine residues clustered at the carboxyl end of the protein. We also report identification of the HU protein biomarker for a C. helveticus strain, whose hup gene was not sequenced, but whose HU amino acid sequence was partially conserved in C. upsaliensis strains. We have also tentatively assigned a approximately 10.5-kDa protein biomarker of a C. concisus strain as an HU protein.     

Thermogravimetric/mass spectrometric characterization of the thermal decomposition of (4-O-methyl-D-glucurono)-D-xylan

A thermogravimetric/mass spectrometric (TG/MS) system was used to characterize the thermolysis reactions of (4-O-methyl-D -glucurono)-D -xylan. The mass spectrometric peaks, measured as function of time, were attributed to water, methanol, carbon monoxide, carbon dioxide, formaldehyde, formic acid, acetic acid, acetone, acrolein, 2-furaldehyde, and 3-hydroxy-2-penteno-1,5-lactone. The time derivative of the thermogravimetric curve (DTG) consisted of two partially overlapping peaks, indicating a multistep mechanism. The mass spectrometric intensities of the peaks assigned to methanol and 2-furaldehyde coincided with the first DTG peak, suggesting that the first DTG peak represents both dehydration and fragmentation pathways. Methanol, water, formyl group, and carbon dioxide contributed to both of the DTG peaks. This indicates that the dehydration, decarboxylation, and decarbonylation took place in two steps. The compounds observed only in the second DTG peak and later (acetone, formic acid, formaldehyde, acrolein, acetic acid, and 3-hydroxy-2-penteno-1,5-lactone) are probably products of reactions which occur after the collapse of the original polysaccharide structure.     

Synthesis and characterization of P(MMA-AA) copolymers for targeted oral drug delivery

This paper describes the development of pH-sensitive poly(methyl methacrylate-acrylic acid) copolymers for the enteric coating of pharmaceutical products for oral administration. To obtain the dissolution at the desired pH level, different pH-sensitive polymers are available on the market. Usually, for each desired dissolution pH, an ad hoc polymer is designed. Thus, different dissolution pH values could ask for completely different polymers. Instead, the materials proposed in this work are copolymers of the same two monomers, and the different dissolution pH was obtained by changing the volume fraction of the hydrophobic methyl methacrylate monomer to the hydrophilic acrylic acid monomer. Increasing the volumetric percentage of methyl methacrylate causes the polymer to dissolve at increasing pH, until the dissolution does not take place at all, and it is replaced by a slow swelling phenomenon. The copolymers obtained were characterized by differential scanning calorimetry, in order to evaluate their glass transition temperature, and these latter were related to %MMA. The molecular weights of the pure polymers (PAA, PMMA) were measured by intrinsic viscosity, to further validate the glass transition temperatures observed. The dissolution of the copolymers was carefully tested in buffer solutions for a dense set of pH values. A linear relationship between dissolution pH and volumetric percentage of methyl methacrylate was obtained from these measurements. As a result, for any physiological compartment, the copolymer which dissolves at the pH of interest can be easily synthesized.     

A new method for determination of transverse isotropic orientation and the associated elastic parameters for intact rock

This paper presents the development of an analytical method to determine the parameters of orientation and deformability of transversely isotropic cylinders of rock using the Council for Scientific Industrial Research (CSIR) triaxial cell under isotropic biaxial loading. The mathematical formulation is based upon the elastic and anisotropic constant transformation presented by Lekhnitskii (in: JJ. Brandstatter (Ed.), Theory of Elasticity of an Anisotropic Elastic Body, Holden-Day Series in Mathematical Physics, Holden Day Inc., San Francisco, 1963, 404p). By using three rosettes with four gages each, the method herein proposed permits the determination of the global tridimensional deformability characteristics of a rock cylinder, using only the local bidimensional deformation measurements provided by the rosette's gages. The new analytical method gives the direction and dip of the isotropy plane together with the magnitude of anisotropic elastic constants for transversely isotropic rocks of Class A (rocks with no visible symmetry planes) and Class B (with visible symmetry planes). No restrictions on the direction of the symmetry planes are imposed. This determination is obtained from strains measured in only one biaxial compression test performed with the CSIR cell on the overcore obtained from in situ stress test.     

Validation of a commercial process for inactivation of Escherichia coli O157:H7, Salmonella typhimurium, and Listeria monocytogenes on the surface of whole muscle beef jerky

We validated the lethality of three time and temperature regimens for commercial processing of whole muscle beef jerky. A total of ca. 8.9 log CFU per strip of multiple-strain cocktails of Escherichia coli O157:H7, Salmonella Typhimurium, or Listeria monocytogenes were separately applied onto the surface of beef strips that were treated as follows: (i) inoculated but not marinated or (ii) inoculated and then marinated. A total of three beef strips for each treatment in each of three trials were separately inoculated with a cocktail of one of the three pathogens and placed on the top, middle, and bottom racks of a loading truck. The strips on the rack were loaded into a commercial smokehouse and cooked and dried for 1.5, 2.5, or 3.5 h at a target temperature of 180 degrees F (82.2 degrees C) with constant (natural hickory) smoking, but without the addition of humidity. Regardless of how the strips were treated or where the strips were placed on the loading rack, drying for 1.5, 2.5, or 3.5 h to a target temperature of 180 degrees F (average of 177.2 +/- 5.6 degrees F [80.7 +/- 3.1 degrees C]), with constant smoke at an initial average relative humidity of 63.1% to a final average relative humidity of 20.9% resulted in a decrease of > or = 7.3 log CFU per strip (> or = 6.9 log CFU/g) for each of the three pathogen cocktails. Of note, marinated strips that were cooked and dried for 2.5 and 3.5 h or nonmarinated strips cooked or dried for 3.5 h also satisfied the U.S. Food Safety and Inspection Service standard of identity (moisture-to-protein ratio < or = 0.75:1) and/or shelf-stability (water activity < or = 0.8) requirements for jerky.     

Reduced Sensitivity RDX Obtained From Bachmann RDX

In recent years much interest has been generated in a quality of reduced sensitivity RDX (RS‐RDX), like I‐RDX^® which, when incorporated in cast cure and even pressable plastic bonded explosives (PBX compositions), can confer reduced shock sensitivity as measured through gap test. At crystal level, lot of work has been done to try to determine which property or properties may explain the behaviour of the corresponding cast PBX composition. But up to now, and despite an international inter‐laboratory comparison (Round Robin) of seven lots of RDX from five different manufacturers conducted from 2003 to 2005, even if some techniques lead to interesting results, there is no dedicated specification to apply to RS‐RDX. This quality (I‐RDX^®) has proved to retain its low sensitivity even after ageing, which does not seem to be the case for standard RDX produced by the Bachmann process (when re‐crystallized under I‐RDX conditions in order to obtain RS‐RDX). It has been shown that the higher sensitivity of RDX produced by the Bachmann process, or the evolution of sensitivity after ageing of RS‐RDX produced from Bachmann RDX may be linked to the presence of octogen (HMX) during the crystallization process. In order to check such hypothesis, low HMX content RDX produced by the Bachmann process has been prepared and evaluated in cast PBX composition (PBX N 109). Results of the characterization of such quality of RDX and its evaluation in cast PBX composition as well as ageing behaviour are presented and discussed; there are indications that removal of HMX from Bachmann RDX may lead to RS‐RDX, which retains its RS character even after ageing.