Minimizing the surface effect of PDMS–glass microchip on polymerase chain reaction by dynamic polymer passivation

Polydimethyl siloxane (PDMS)–glass microchip has a very strong surface effect on polymerase chain reaction (PCR), leading to a very poor PCR yield. In the work reported here, practical dynamic passivation of surfaces of PDMS–glass microchip using polyethylene glycol (PEG) or polyvinylpyrrolidone (PVP) was achieved using a conventional thermocycler. The passivation procedure was cost‐effective and easy to conduct. The effects of polymer molecular weight and polymer concentration on tube PCR efficiency were investigated primarily to prescreen out suitable polymers and polymer concentrations in the PCR mixture. The result from tube PCR indicated that both PEG and PVP could affect the performance of Taq polymerase. A final concentration of 0.025% (w/v) or 0.4% (w/v) polymer in the PCR mixture can enhance the tube PCR, while 1% (w/v) polymer was found to inhibit the reaction. PEG was more effective in tube PCR, although PVP performed better in chip PCR. Instead of employing the polymer directly in the PCR mixture, i.e. the conventional in situ passivation approach, another approach of dynamic passivation by pre‐injecting polymers into the microchip achieved better performance. The efficiency of pre‐passivation was found to follow the order: PVP10000>PVP55000, PEG8000> PEG10000>PEG400. After pre‐passivation with PVP10000, PVP55000 and PEG8000, the PCR efficiency can recover to 93%, 86% and 83%, respectively, of that obtained from tube PCR. Copyright © 2006 Society of Chemical Industry     

Non-Newtonian laminar pulsating heat and fluid flow in plane duct

In the present study, laminar pulsating power-law momentum and heat transfer in a uniformly heated plane duct is studied analytically. Assuming that fully developed conditions exist both hydrodynamically and thermally, a perturbation series method is utilized to derive analytical solutions for the momentum and energy balance equations, and the amplitude is prescribed as the perturbation parameter. For varying values of the power-law index ( $n$), representing pseudoplastic, Newtonian, and dilatant fluids, effects of dimensionless amplitude ( $ϵ$) and frequency ( $F$) on periodic and period-averaged friction factor and Nusselt number are obtained. The results obtained for Newtonian fluid are shown to be in good harmony with the corresponding findings in the open literature.     

Dipole moments of styrene/4-vinylpyridine copolymers—II: Relation to microstructure

Mean-square dipole moment values of styrene/4-vinylpyridine (S4VP) copolymers determined at 25–60°C in 1,4-dioxane solutions were related to the microstructure of the chains. Data on the synthesis and dipole moments of S4VP copolymers were used to calculate the distribution of triad fractions and effective dipole moments of styrene, S-centred, and 4-vinylpyridine, V-centred, fractions in the copolymer chains. The relative magnitudes of the effective dipole moment values calculated for each type of triad reflect the effect of dipole–dipole interactions on these values.     

A methodology for analyzing finite buffer tandem manufacturing systems with N-policy

We develop a methodology for the analysis of a finite buffer tandem manufacturing system where the machines follow N-policy. We model the system using open queuing networks. The throughput of the system is calculated using decomposition, isolation and expansion methodologies. The methodology is tested rigorously by using orthogonal arrays to design the experiments. A t-test is used to investigate the differences between the results of the methodology and their corresponding simulation results. The comparison shows that the methodology is robust and remarkably accurate over a wide range of parameters.     

Mitochondria-targeted disruptors and inhibitors of cytochrome c/cardiolipin peroxidase complexes: a new strategy in anti-apoptotic drug discovery

The critical role of mitochondria in programmed cell death leads to the design of mitochondriotropic agents as a strategy in regulating apoptosis. For anticancer therapy, stimulation of proapoptotic mitochondrial events in tumor cells and their suppression in surrounding normal cells represents a promising paradigm for new therapies. Different approaches targeting regulation of components of mitochondrial antioxidant system such as Mn-SOD demonstrated significant antitumor efficiency, particularly in combination therapy. This review is focused on a newly discovered early stage of mitochondria-dependent apoptosis - oxidative lipid signaling involving a mitochondria-specific phospholipid cardiolipin (CL). Cytochrome c (cyt c) acts as a CL-specific peroxidase very early in apoptosis. At this stage, the hostile events are still secluded within the mitochondria and do not reach the cytosolic targets. CL oxidation process is required for the release of pro-apoptotic factors into the cytosol. Manipulation of cyt c interactions with CL, inhibition of peroxidase activity, and prevention of CL peroxidation are prime targets for the discovery of anti-apoptotic drugs acting before the "point-of-no-return" in the fulfillment of the cell death program. Therefore, mitochondria-targeted disruptors and inhibitors of cyt c/CL peroxidase complexes and suppression of CL peroxidation represent new strategies in anti-apoptotic drug discovery.     

A direct borohydride-peroxide fuel cell-LiPO hybrid motorcycle prototype: Investigation of short-term behavior of DBPFC stack – I

In the present study, a safer and more performance 270?W Direct Borohydride/Peroxide Fuel Cell (DBPFC) Stack has been constructed for an electrical hybrid motorbike application. Performance tests were carried out with single cell and 5–10–25?cell stacks. Performance loss has been not observed while stacking DBPFC because of the Independent Cell Liquid Distribution Network (ICLDN) system and special bipolar plate design. The power densities have been approximately 120?mWcm^?2 for a single DBPFC and 25-cell DBPFC stack without any stacking loss. Additionally, the stack temperature has been controlled by keeping the oxidant concentration low, and it has been maintained at approximately 52?°C without using a cooling system. The short-term performances of the 25-cell DBPFC stack have been tested over 25?min and 50?min, which showed that the performance and stack security of the DBPFC are highly related to the oxidant properties, such as the concentration, temperature and feed type.     

A Cost-Efficient and Simple Plant Oil DNA Extraction Protocol Optimized for DNA-Based Assessment of Product Authenticity

DNA-based assays offer precision in ascertaining the species/cultivar origin of agro-food products. Yet, obtaining DNA of sufficient quality and quantity is the main challenge while performing DNA-based food authentication analyses. The aim of the present work was to standardize a cost-efficient, easy-to-apply, yet effective plant oil DNA isolation protocol that allows reliable downstream PCR-based analyses. Because capillary electrophoresis (CE) separation of species/cultivar discriminating genomic fragments is a widely adopted approach in food genomics, a CE system was utilized in order to assess the performance of the proposed cetyl trimethyl ammonium bromide (CTAB)-based protocol. A plastid intergenic spacer and a nuclear olive gene were used as targets in order to evaluate the amplificability of DNA extracted with the CTAB-based protocol. The plastid barcode not only allowed assessing the reproducibility of PCR amplifications from the extracted oil DNA samples (olive, hazelnut, corn, rapeseed, cottonseed, and soybean oils) but also proved successful in discriminating all tested oil crop species based on amplified fragment length polymorphisms. Moreover, the barcode assay proved successful in correctly identifying the tested olive oil: cottonseed oil blends as admixtures of the two oil species. Thus, it was also feasible to demonstrate the potential of the barcode sequence as a discriminatory analyte to detect adulteration in plant oils. In addition, application of a CAPS (cleaved amplified polymorphic sequence) assay designed to genotype a nuclear SNP (single nucleotide polymorphism) marker resulted in the successful identification of the two single-cultivar olive oils included in the study. As a result of the present work, it was feasible to standardize a reliable and cost-efficient DNA extraction protocol that works well with both unrefined (olive and hazelnut) and refined (corn, rapeseed, cottonseed, and soybean) oils.     

Photovoltaic textile structure using polyaniline/carbon nanotube composite materials

In this paper, an investigation of flexible electrodes for photovoltaic textile structures utilizing polymer‐based organic materials is presented. The composite structure consisting of a blend of water dispersible carbon nanotube:polyaniline (CNT:PANI) components with poly(3,4 ethylenedioxythiophene):poly(styrenesulfonate) (PEDOT:PSS) was applied to be used as the hole collecting electrode in photovoltaic textile applications. Both photovoltaic textiles and conventional solar cells were fabricated by using a blend of poly(3‐hexylthiophene‐2,5‐diyl) (P3HT):(6,6)‐phenyl C61‐butyric acid methyl ester (PCBM). All devices were characterized by measuring current versus voltage characteristics under AM 1.5 conditions. The nanoscale morphology of the photovoltaic structures was investigated using scanning electron microscopy and atomic force microscopy.     

A complementary study on novel PdAuCo catalysts: Synthesis,characterization, direct formic acid fuel cell application,and exergy analysis

At present, Pd containing (10–40 wt%) multiwall carbon nanotube (MWCNT) supported Pd monometallic, Pd:Au bimetallic, and PdAuCo trimetallic catalysts are prepared via NaBH₄ reduction method to examine their formic acid electrooxidation activities and direct formic acid fuel cell performances (DFAFCs) when used as anode catalysts. These catalysts are characterized by advanced analytical techniques as N₂ adsorption and desorption, XRD, SAXS, SEM-EDX, and TEM. Electronic state of Pd changes by the addition of Au and Co. Moreover, formic acid electrooxidation activities of these catalysts measured by CV indicates that particle size changes in wide range play a major role in the formic acid electrochemical oxidation activity, ascribed the strong structure sensitivity of formic acid electrooxidation reaction. PdAuCo (80:10:10)/MWCNT catalyst displays the most significant current density increase. On the other hand, lower CO stripping peak potential obtained for PdAuCo (80:10:10)/MWCNT catalyst, attributed to the awakening of the Pd-adsorbate bond strength down to its optimum value, which favors higher electrochemical activity. DFAFCs performance tests and exergy analysis reveal that fuel cell performances increase with the addition of Au and Co which can be attributed to synergetic effect. Furthermore, temperature strongly influences the performance of formic acid fuel cell.