Comparison of Field Data and Water-Balance Predictions for a Capillary Barrier Cover

Predictions of surface runoff (R), evapotranspiration (ET), soil–water storage (S), and percolation obtained using three numerical codes (LEACHM, HYDRUS, and UNSAT-H) employed to simulate the hydrology of water-balance covers are compared to measured water-balance data from a lysimeter used to monitor a capillary barrier cover profile in a subhumid climate. All of the codes captured the seasonal variations in water-balance quantities observed in the field. LEACHM and HYDRUS predicted total R during the monitoring period with reasonable accuracy (within 18?mm using general mean parameters), but the timing of predicted and observed R events was different. In contrast, UNSAT-H consistently overpredicted R by at least 239?mm. Evapotranspiration was predicted reliably (within 60?mm) with all three codes when data from the first year were excluded. However, all three codes overpredicted ET in late winter and early spring, when snowmelt was occurring and S was accumulating in the field. Consequently, S generally was underpredicted by all three codes. Predicted and measured percolation were in good agreement (within 1?mm/year), except during the first year. Results of the comparison indicate that cover modelers should scrutinize runoff predictions for reasonableness and carefully account for snow accumulation, snow melt, and ET during snow cover.     

Endogenous driving and synchronization in cardiac and uterine virtual tissues: bifurcations and local coupling

Cardiac and uterine muscle cells and tissue can be either autorhythmic or excitable. These behaviours exchange stability at bifurcations produced by changes in parameters, which if spatially localized can produce an ectopic pacemaking focus. The effects of these parameters on cell dynamics have been identified and quantified using continuation algorithms and by numerical solutions of virtual cells. The ability of a compact pacemaker to drive the surrounding excitable tissues depends on both the size of the pacemaker and the strength of electrotonic coupling between cells within, between, and outside the pacemaking region. We investigate an ectopic pacemaker surrounded by normal excitable tissue. Cell-cell coupling is simulated by the diffusion coefficient for voltage. For uniformly coupled tissues, the behaviour of the hybrid tissue can take one of the three forms: (i) the surrounding tissue electrotonically suppresses the pacemaker; (ii) depressed rate oscillatory activity in the pacemaker but no propagation; and (iii) pacemaker driving propagations into the excitable region. However, real tissues are heterogeneous with spatial changes in cell-cell coupling. In the gravid uterus during early pregnancy, cells are weakly coupled, with the cell-cell coupling increasing during late pregnancy, allowing synchronous contractions during labour. These effects are investigated for a caricature uterine tissue by allowing both excitability and diffusion coefficient to vary stochastically with space, and for cardiac tissues by spatial gradients in the diffusion coefficient.     

Performance of North American Bioreactor Landfills. II: Chemical and Biological Characteristics

The objective of this research was to examine the performance of five North American bioreactor landfills. This paper represents the second of a two-part series and addresses biological and chemical aspects of bioreactor performance including gas production and management, and leachate chemistry. The data support accelerated methane generation at several landfills (k = 0.08–0.21?1/year) relative to the AP-42 default decay rate (k = 0.04?1/year). While the data indicate that gas collection increases at bioreactor landfills, a general relationship between decay rate and moisture added or wet weight water content could not be identified. There was no indication that gas collection increases appreciably when the water content reaches 40%. Most of the leachates at the landfills in this study were commingled from cells operating as a bioreactor and conventionally. Nevertheless, trends in pH and BOD:COD in the bioreactor leachates were consistent with the impacts of enhanced biological activity. Ammonia concentrations also increased over time but remained below levels reported to be inhibitory. For both heavy metals and speciated organic chemicals, there was no indication that bioreactor landfill leachate is significantly different from leachate generated at conventional landfills.     

Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations

Dynameomics is a project to investigate and catalog the native-state dynamics and thermal unfolding pathways of representatives of all protein folds using solvated molecular dynamics simulations, as described in the preceding paper. Here we introduce the design of the molecular dynamics data warehouse, a scalable, reliable repository that houses simulation data that vastly simplifies management and access. In the succeeding paper, we describe the development of a complementary multidimensional database. A single protein unfolding or native-state simulation can take weeks to months to complete, and produces gigabytes of coordinate and analysis data. Mining information from over 3000 completed simulations is complicated and time-consuming. Even the simplest queries involve writing intricate programs that must be built from low-level file system access primitives and include significant logic to correctly locate and parse data of interest. As a result, programs to answer questions that require data from hundreds of simulations are very difficult to write. Thus, organization and access to simulation data have been major obstacles to the discovery of new knowledge in the Dynameomics project. This repository is used internally and is the foundation of the Dynameomics portal site http://www.dynameomics.org. By organizing simulation data into a scalable, manageable and accessible form, we can begin to address substantial questions that move us closer to solving biomedical and bioengineering problems.     

Scientists’ perceptions of the social and political implications of their research

We explore an empirical approach to studying the social and political implications of science by gathering scientists’ perceptions of the social impacts of their research. It was found that 78 percent of surveyed scientists from a variety of fields responding to a survey indicated that the research performed in connection with a recent highly cited paper had such implications. Health related implications were the most common, but other types of implications encountered were technological spin-offs, public understanding, economic and policy benefits. Surprisingly many scientists considered the advancement of science itself to be a social implication of their research. The relations of these implications to the field and topics of research are examined, and a mapping of implications gives an overview of the major dimensions of the social impacts of science.     

Parametric Study on the Production of Renewable Fuels and Chemicals from Phospholipid-Containing Biomass

Heterogeneous catalytic cracking of lipids into transportation fuels and other specialty chemicals offers a unique opportunity to provide sustainable energy while utilizing the current petroleum infrastructure. This study addresses a possible route for the utilization of phospholipid-containing biomass for production of renewable fuels and chemicals. The first part of the study focused on reaction pathways associated with the catalytic cracking of model phospholipid into fuel-type compounds. The results indicated that phospholipid cracking proceeds via acid-catalyzed mechanisms, which resulted to cleavage of fatty acids and glycerol moieties. Microbial lipids, which contain large concentrations of phospholipids, are a potential non-food related feedstock to displace petroleum. Among possible sources of microbial lipids, activated sludge offers a distinct advantage for its availability and abundance at a potential fee. The second part of this work dealt with the conversion of activated sludge to chemicals of value as fuel components through fluidized-bed catalytic cracking. The effect of moisture level and catalyst loading were determined. Results indicated that moisture level of up to 15 % (weight) has no effect on total product yield. On the other hand, higher catalyst loading resulted to a higher yield of gaseous product. Significant coke deposition was inferred as indicated by the high proportion of phenolic compounds produced from pyrolytic reactions. The results of this study provide a potential route of utilizing bulk lipid feedstocks, without the removal of phosphorus-containing molecules, to produce fuel components.     

Effects of feeding strategy on milk production, reproduction, pasture utilization, and economics of autumn-calving dairy cows in eastern North Carolina

A balance among stocking rate (SR), pasture management, and supplementary feeding is required to optimize overall farm performance and profitability in pasture-based dairying. Beginning in September 2003, a seasonal, autumn-calving, pasture-based farming system was established to address the effects of feeding strategy (FS; i.e., a unique combination of stocking and supplementation rate) on productive, reproductive, and economic performance of lactating herds over 3 yr. Eighty lactating cows (1/3 Holsteins, 1/3 Jerseys, and 1/3 crosses of those breeds) were randomly assigned to either a lesser stocking, lesser supplementation group [LSR; 2.2 cows/ha, 6.3 kg of dry matter (DM) of a corn-based concentrate consumed daily, n=40] or a greater stocking, greater supplementation group (HSR; 3.3 cows/ha, 9.2 kg of DM of a corn-based concentrate consumed daily, n=40). Pasture/forage crop rotations included annual ryegrass and sorghum-Sudan (50%), annual ryegrass and bermudagrass (20%), and a tall fescue-white clover pasture (30%). Pre- and postgrazing herbage mass values and grazing intervals (3,347±255.8 kg of DM/ha, 1,861±160.6 kg of DM/ha, 23.6±1.9 d) did not differ between FS. The nutritive value of fresh and conserved forages was similar between feeding strategies, except for acid detergent fiber in freshly grazed bermudagrass (29.6 vs. 26.3% of DM for LSR and HSR, respectively). Cows on HSR tended to spend more time on an adjacent feeding area where conserved forages were offered (85 vs. 61 d/yr) as opposed to grazing paddocks (204 vs. 228 d/yr). Lactation performance was greater for HSR; cows on HSR produced 10.8% more milk fat and 6.3% more milk protein than cows on LSR. Holstein cows produced the greatest amounts of mature-equivalent milk, but did not differ from crossbred cows in terms of energy-corrected milk, and mature-equivalent fat and protein yields. Reproductive efficiency did not differ among feeding strategy, but breed differences were observed; conception rates at first and all services, as well as pregnancy rates, were greater for Jersey and crossbred cows compared with Holsteins. The greater stocking rate required additional supplemental concentrate and time away from grazing paddocks, but reproductive efficiency was similar and overall lactation performance was greater. The greater stocking rate resulted in increased productivity and greater income over feed costs per unit of land.     

Verification of cardiac tissue electrophysiology simulators using an N-version benchmark

Ongoing developments in cardiac modelling have resulted, in particular, in the development of advanced and increasingly complex computational frameworks for simulating cardiac tissue electrophysiology. The goal of these simulations is often to represent the detailed physiology and pathologies of the heart using codes that exploit the computational potential of high-performance computing architectures. These developments have rapidly progressed the simulation capacity of cardiac virtual physiological human style models; however, they have also made it increasingly challenging to verify that a given code provides a faithful representation of the purported governing equations and corresponding solution techniques. This study provides the first cardiac tissue electrophysiology simulation benchmark to allow these codes to be verified. The benchmark was successfully evaluated on 11 simulation platforms to generate a consensus gold-standard converged solution. The benchmark definition in combination with the gold-standard solution can now be used to verify new simulation codes and numerical methods in the future.     

Role of volatilization in changing TBA and MTBE concentrations at MTBE-contaminated sites

Tertiary butyl alcohol (TBA) is commonly found as an impurity in methyl tertiary butyl ether (MTBE) added to gasoline. Frequent observations of high TBA, and especially rising TBA/MTBE concentration ratios, in groundwater at gasoline spill sites are generally attributed to microbial conversion of MTBE to TBA. Typically overlooked is the role of volatilization in the attenuation of these chemicals especially in the vadose zone, which is a source of contamination to groundwater. Here we show that volatilization, particularly through remediation by vapor extraction, can substantially affect the trends in TBA and MTBE concentrations and the respective mass available to impact groundwater aquifers, through the preferential removal of more volatile compounds, including MTBE, and the apparent enrichment of less volatile compounds like TBA. We demonstrate this phenomenon through numerical simulations of remedial-enhanced volatilization. Results show increases in TBA/MTBE concentration ratios consistent with ratios observed in groundwater at gasoline spill sites. Volatilization is an important, and potentially dominant, process that can result in concentration trends similar to those typically attributed to biodegradation.