TreePlus: interactive exploration of networks with enhanced tree layouts

Despite extensive research, it is still difficult to produce effective interactive layouts for large graphs. Dense layout and occlusion make food Webs, ontologies and social networks difficult to understand and interact with. We propose a new interactive visual analytics component called TreePlus that is based on a tree-style layout. TreePlus reveals the missing graph structure with visualization and interaction while maintaining good readability. To support exploration of the local structure of the graph and gathering of information from the extensive reading of labels, we use a guiding metaphor of "plant a seed and watch it grow." It allows users to start with a node and expand the graph as needed, which complements the classic overview techniques that can be effective at (but often limited to) revealing clusters. We describe our design goals, describe the interface and report on a controlled user study with 28 participants comparing TreePlus with a traditional graph interface for six tasks. In general, the advantage of TreePlus over the traditional interface increased as the density of the displayed data increased. Participants also reported higher levels of confidence in their answers with TreePlus and most of them preferred TreePlus     

Experimental Investigation of Nonconventional Confinement for Concrete Using FRP

The present study investigates experimentally the behavior of concrete confined with fiber reinforced polymers (FRP) in the form of jackets which are applied according to a number of nonconventional techniques. First, the effectiveness of various jacketing configurations combined with anchors as a measure of increasing the strength and deformability of L-shaped columns is investigated. It is concluded that easy to install and low-cost anchors made of resin impregnated fibers properly placed at the reentrant corner of L-shaped columns enable excellent mobilization of confining stresses supplied by the FRP jackets. Next, a number of alternative confinement methods are investigated on concrete cylinders, aimed at quantifying the effectiveness of (1) unbonded jacketing, (2) spirally applied strips attached only at their ends, and (3) jacketing directly on concrete with mortar plastering. Although the study may be regarded as preliminary, it provides useful experimental support to a number of techniques which have the potential to open new horizons in the field of externally applied FRP for enhancing concrete confinement.     

A model for teaching psychotherapy theory through an integrative structure.

This article discusses a model for teaching psychotherapy theory through an integrative structure from the start of graduate students' training. This model articulates an ordering structure for the reputed 400+ so-called "theories" of psychotherapy. The rationale for such a structure highlights one dimension among several--that is, the recognition that a vast majority of mental health practitioners describe their orientation as eclectic or integrative. Professionals in training are encouraged to use this structure as an organizing principle to create the underpinnings for future professional development. The structure informs all aspects of a graduate-level course, including its syllabus, the textbooks selected, the reader, learning objectives, and tools for learning outcome assessment. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Analysis of room temperature magnetic regenerative refrigeration

Results of a room temperature magnetic refrigeration test bed and an analysis using a computational model are presented. A detailed demonstration of the four sequential processes in the transient magnetocaloric regeneration process of a magnetic material is presented. The temperature profile during the transient approach to steady state operation was measured in detail. A 5 °C evolution of the difference of temperature between the hot end and the cold end of the magnetocaloric bed due to regeneration is reported. A model is developed for the heat transfer and fluid mechanics of the four sequential processes in each cycle of thermal wave propagation in the regenerative bed combined with the magnetocaloric effect. The basic equations that can be used in simulation of magnetic refrigeration systems are derived and the design parameters are discussed.     

Examination of the Response of Regularly Packed Specimens of Spherical Particles Using Physical Tests and Discrete Element Simulations

Significant insight into the response of granular materials can be gained by coupling accurately controlled physical tests with complementary discrete element simulations. This paper discusses a series of triaxial and plane strain laboratory compression tests on steel spheres with face-centered-cubic and rhombic packings, as well as discrete element simulations of these tests. The tests were performed on specimens of uniform-sized steel balls and on specimens of steel balls with specified distributions of ball diameters. The packing configurations are ideal and differ considerably from real sand specimens, however, studies of such idealized granular materials can yield considerable insight into the response of granular materials and the capability of discrete element simulations to capture the response. The differences in response for the two packing configurations considered illustrate the importance of fabric. The numerical simulations captured the observed laboratory response well if the particle configurations, particle sizes, and boundary conditions were accurately represented. However, the postpeak response is more difficult to capture, and it is shown to be sensitive to the coefficient of friction assumed along the specimen boundaries. The simulations of the tests on the nonuniform-sized specimens demonstrated a clear correlation between strength and coordination number.     

Corrugator muscle responses are associated with individual differences in positivity-negativity bias.

Corrugator supercilii muscle activity is considered an objective measure of valence because it increases in response to negatively valenced facial expressions (angry) and decreases to positive expressions (happy). The authors sought to determine if corrugator activity could be used as an objective measure of positivity-negativity bias. The authors recorded corrugator responses as participants rated angry, happy, and surprised faces as “positive” or “negative.” The critical measure of bias was the percentage of positive versus negative ratings assigned to surprised faces by each participant. Reaction times for surprise expressions were longer than for happy and angry expressions, consistent with their ambiguous valence. Participants who tended to rate surprised faces as negative showed increased corrugator activity to surprised faces, whereas those who tended to rate surprise as positive showed decreased activity. Critically, corrugator responses reflected the participants’ bias (i.e., their tendency to rate surprise as positive or negative). These data show that surprised faces constitute a useful tool for assessing individual differences in positivity-negativity bias, and that corrugator activity can objectively reflect this bias. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Sexually stimulating signals of canary ( Serinus canaria) songs: Evidence for a female-specific auditory representation in the HVc nucleus during the breeding season.

During the breeding season under long-day conditions, male canaries sing sexually attractive songs and females respond behaviorally to such songs. This study assessed whether auditory response properties of neurons in nucleus HVc of female and male canaries are tuned to sexually salient song features: special song phrases and canary song segmentation. In sexually receptive female canaries, neurons responded to special song phrases with a decreased spike rate and were sensitive to canary song segmentation. The nonreceptive females showed no clear response to special song phrases. In females on short days, neurons responded to song phrases with an increase in activity. In males on long days, they exhibited phasic responses after the phrase onset, whatever the song phrase and song segmentation. This study demonstrates both a plasticity in relation to females' sexual responsiveness and a sexual dimorphism in the auditory processing performed in the HVc. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

BK Polyomavirus bkv-miR-B1-5p: A Stable Micro-RNA to Monitor Active Viral Replication after Kidney Transplantation

Background: Bkv-miR-B1-5p is a viral micro-RNA (miRNA) specifically produced during BK polyomavirus (BKPyV) replication. Recent studies have suggested using bkv-miR-B1-5p as a biomarker to monitor viral infection and predict complications in kidney transplant patients. To identify the technical limitations of this miRNA quantification in biological samples, knowledge of its stability and distribution in the extracellular compartment is necessary. Moreover, a proof of concept for using bkv-miR-B1-5p as a biomarker of active replication in chronic infection is still missing in the published literature. Methods: The stability of bkv-miR-B1-5p was evaluated in samples derived from cell cultures and in urine from BKPyV-infected kidney transplant recipients. The miRNA was quantified in different fractions of the extracellular compartment, including exosomes, and protein binding was evaluated. Finally, we developed an in vitro model for chronic culture of BKPyV clinical isolates to observe changes in the bkv-miR-B1-5p level during persistent infections. Results: Bkv-miR-B1-5p is a stable biomarker in samples from humans and in vitro experiments. Marginally associated with the exosomes, most of the circulating bkv-miR-B1-5p is bound to proteins, especially Ago2, so the miRNA quantification does not require specific exosome isolation. The bkv-miR-B1-5p level is predictable of viral infectivity, which makes it a potential specific biomarker of active BKPyV replication after kidney transplantation.     

Parallel Dynamic Graph Partitioning for Adaptive Unstructured Meshes

A parallel method for the dynamic partitioning of unstructured meshes is described. The method introduces a new iterative optimization technique known as relative gain optimization which both balances the workload and attempts to minimize the interprocessor communications overhead. Experiments on a series of adaptively refined meshes indicate that the algorithm provides partitions of an equivalent or higher quality to static partitioners (which do not reuse the existing partition) and much more rapidly. Perhaps more importantly, the algorithm results in only a small fraction of the amount of data migration compared to the static partitioners.