Computer-aided gene design

A computer program, which runs on MS-DOS personal computers,is described that assists in the design of synthetic genes codingfor proteins. The goal of the program is the design of a genewhich (0 contains as many unique restriction sites as possibleand (ii) uses a specific codon usage. The gene designed accordingto the criteria above is (i) suitable for ‘modular mutagenesis’experiments and (ii) optimized for expression. The program 'reverse-translates'protein sequences into degenerated DNA sequences, generatesa map of potential restriction sites and locates sequence positionswhere unique restriction sites can be accommodated. The nucleicacid sequence is then ‘refined’ according to a specificcodon usage to remove any degeneration. Unique restriction sites,if potentially present, can be ‘forced’ into thedegenerated nucleic acid sequence by using 'priority codes'assigned to different restriction sequences.     

Cloud monitoring: A survey

Nowadays, Cloud Computing is widely used to deliver services over the Internet for both technical and economical reasons. The number of Cloud-based services has increased rapidly and strongly in the last years, and so is increased the complexity of the infrastructures behind these services. To properly operate and manage such complex infrastructures effective and efficient monitoring is constantly needed.Many works in literature have surveyed Cloud properties, features, underlying technologies (e.g. virtualization), security and privacy. However, to the best of our knowledge, these surveys lack a detailed analysis of monitoring for the Cloud. To fill this gap, in this paper we provide a survey on Cloud monitoring. We start analyzing motivations for Cloud monitoring, providing also definitions and background for the following contributions. Then, we carefully analyze and discuss the properties of a monitoring system for the Cloud, the issues arising from such properties and how such issues have been tackled in literature. We also describe current platforms, both commercial and open source, and services for Cloud monitoring, underlining how they relate with the properties and issues identified before. Finally, we identify open issues, main challenges and future directions in the field of Cloud monitoring.¹     

The HEPD particle detector of the CSES satellite mission for investigating seismo-associated perturbations of the Van Allen belts

CSES(China Seismo-Electromagnetic Satellite) is a mission developed by CNSA(Chinese National Space Administration) and ASI(Italian Space Agency), to investigate the near-Earth electromagnetic, plasma and particle environment, for studying the seismo-associated disturbances in the ionosphere-magnetosphere transition zone. The anthropogenic and electromagnetic noise,as well as the natural non-seismic electromagnetic emissions is mainly due to tropospheric activity. In particular, the mission aims to confirming the existence of possible temporal correlations between the occurrence of earthquakes for medium and strong magnitude and the observation in space of electromagnetic perturbations, plasma variations and precipitation of bursts with highenergy charged particles from the inner Van Allen belt. In this framework, the high energy particle detector(HEPD) of the CSES mission has been developed by the Italian LIMADOU Collaboration. HEPD is an advanced detector based on a tower of scintillators and a silicon tracker that provides good energy and angular resolution and a wide angular acceptance, for electrons of 3–100 Me V, protons of 30–200 Me V and light nuclei up to the oxygen. CSES satellite has been launched on February 2~(nd), 2018 from the Jiuquan Satellite Launch Center(China).     

Prevalence of sensitization to Cupressus sempervirens: a 4-year retrospective study

In the last few years Cupressus sempervirens has been identified as the cause of an increasing number of cases of late winter-early spring pollinosis in Mediterranean countries. We conducted a 4-year retrospective study of a large group of subjects with documented allergic respiratory disease in order to determine the prevalence, clinical significance and annual rate of sensitization to C. sempervirens pollen. Anamnestic data and skin prick tests (SPT) with common aeroallergens and C. sempervirens extract were collected from 1397 subjects (712 male and 685 female) resident in Latium, a region in central Italy, with complaints related to upper- or lower-respiratory-tract disorders or conjunctival disease. Two hundred and forty-three subjects (17.4%) showed positive results to C. sempervirens extract; 47 (19.3%) of them were monosensitized. The annual sensitization rate of SPT positivity to C. sempervirens varied from 7.2% in 1995 to 22% in 1998. All the subjects monosensitized to cypress pollen had symptoms from January through April. Our study suggests that sensitivity to C. sempervirens is responsible for respiratory symptoms in an increasing percentage of subjects. Further studies are needed to determine its frequency at the national level.     

Large-scale production of high-quality multi-walled carbon nanotubes: Role of precursor gas and of Fe-catalyst support

The crucial role of precursor gas (PG) and of catalyst support (CS) in the growth of multi-walled C nanotubes (MWCNTs) by iron-catalysed chemical vapour deposition (CVD) is evidenced. This is accomplished by comparing structural and morphological properties of MWCNTs synthesised by the use of different PGs (ethane and isobutane) and CSs (silica and alumina). The results of analyses, carried out on catalysts and C deposits by scanning electron microscopy (SEM), high-resolution transmission electron microscopy (HRTEM), Raman spectroscopy (RS), thermo-gravimetry (TG) and X-ray diffraction (XRD), demonstrate that Al₂O₃-supported catalysts are more efficient than SiO₂-supported ones in decomposing hydrocarbons. The use of i-C₄H₁₀ as PG allows reducing Fe-encapsulation and improving yield (Y_C) and selectivity, so as the large-scale production (Y_C > 900 wt.%) of high-quality nanotubes can be operated even at moderate reaction temperature (600 °C) after proper calibration of Fe-load (29 wt.%) and catalyst reduction temperature (500 °C).     

GBA Mutations Influence the Release and Pathological Effects of Small Extracellular Vesicles from Fibroblasts of Patients with Parkinson’s Disease

Heterozygous mutations in the GBA gene, encoding the lysosomal enzyme glucocerebrosidase (GCase), are the strongest known genetic risk factor for Parkinson’s disease (PD). The molecular mechanisms underlying the increased PD risk and the variable phenotypes observed in carriers of different GBA mutations are not yet fully elucidated. Extracellular vesicles (EVs) have gained increasing importance in neurodegenerative diseases since they can vehiculate pathological molecules potentially promoting disease propagation. Accumulating evidence showed that perturbations of the endosomal–lysosomal pathway can affect EV release and composition. Here, we investigate the impact of GCase deficiency on EV release and their effect in recipient cells. EVs were purified by ultracentrifugation from the supernatant of fibroblast cell lines derived from PD patients with or without GBA mutations and quantified by nanoparticle tracking analysis. SH-SY5Y cells over-expressing alpha-synuclein (α-syn) were used to assess the ability of patient-derived small EVs to affect α-syn expression. We observed that defective GCase activity promotes the release of EVs, independently of mutation severity. Moreover, small EVs released from PD fibroblasts carrying severe mutations increased the intra-cellular levels of phosphorylated α-syn. In summary, our work shows that the dysregulation of small EV trafficking and alpha-synuclein mishandling may play a role in GBA-associated PD.     

Multivariate Analysis of <Superscript>1</Superscript>H-NMR Spectra of Genetically Characterized Extra Virgin Olive Oils and Growth Soil Correlations

Mono-varietal extra virgin olive oils were micro-extracted from drupes that were selectively collected from 28 trees distributed in five different Southern Italian Apulian areas. Nuclear Magnetic Resonance (NMR) profiles of these oil samples were correlated to the genetic (young green material) and soil (samples collected within the foliage projection) data of the tree of origin. Genetic analysis, performed on the samples using SSRs (Simple Sequence Repeats) by 9 microsatellite loci, confirmed the specific cultivar assignment (among Cima di Mola, Coratina, Ogliarola, and Oliva Rossa cultivars). Chemometric methods applied to ¹H-NMR spectroscopic data were used for cultivar and geographical origin discrimination of the studied extra virgin olive oils. Linear Discriminant Analysis (LDA) afforded a high reliability degree for discriminating cultivars (almost 90% of prediction ability), and a good assigning ability for the geographical origin (Ogliarola and Coratina samples used as subsets). Soil analyses were performed for each tree. Regression analysis was applied to soil composition in order to correlate available nutrients and total metals with the content of fatty acids and minor components present in monovarietal extra virgin olive oils. In the case of oleic and linoleic fatty acids, and for some terpenes, B, Cr, Mn, Zn were found to give significant correlations. Zn and Mn were the most significant trace elements for all the correlations found (p < 0.01). The results obtained (genetic, spectroscopic and soil analyses) are discussed as a multidisciplinary approach for setting up a strategy for a cultivar and/or geographic origin certification committed database construction.     

The interactive effects of irrigation,nitrogen fertilisation rate,delayed harvest and storage on the polyphenol content in red grape (Vitis vinifera) berries: A factorial experimental design

Polyphenol concentrations, including anthocyanidins, flavonols, flavan-3-ols and stilbenes, were quantified by liquid chromatography/mass spectrometry in two cultivars of red grapes for daily consumption, which were subjected to different kinds of water supply and nitrogen fertilisation rates. Samples from the same vineyards were also analysed after a 6 week storage in a refrigerator and 6 week delayed harvesting. Berry skins and seeds were analysed separately.     

Flame acceleration due to turbulence produced by obstacles

This paper reports on an investigation of the influence of obstacles on the propagation of freely expanding cylindrical flames. The flame speed is found to depend critically on the obstacle configuration and flame speeds up to 130 m/sec in stoichiometric methane-air mixtures are readily achieved by placing appropriate turbulence producing obstacles in the flame path. This is ～ 24 times the flame speed observed with no obstacles. The dramatic influence of obstacles is interpreted in terms of the positive feedback coupling between the flame itself and the turbulence and flow field distortions produced by the obstacles. It is also shown that the flame is unable to maintain its large turbulent flame speed without repeated obstacles to provide flow field distortions and turbulence continuously.