Desynchronization and inhibition of Kuramoto oscillators by scalar mean-field feedback

Motivated by neuroscience applications, and in particular by the deep brain stimulation treatment for Parkinson’s disease, we have recently derived a simplified model of an interconnected neuronal population under the effect of its mean-field proportional feedback. In this paper, we rely on that model to propose conditions under which proportional mean-field feedback achieves either oscillation inhibition or desynchronization. More precisely, we show that for small natural frequencies, this scalar control signal induces an inhibition of the collective oscillation. For the closed-loop system, this situation corresponds to a fixed point which is shown to be almost globally asymptotically stable in the fictitious case of zero natural frequencies and all-to-all coupling and feedback. In the case of an odd number of oscillators, this property is shown to be robust to small natural frequencies and heterogencities in both the coupling and feedback topology. On the contrary, for large natural frequencies, we show that scalar proportional mean-field feedback is able to induce desynchronization. After having recalled a formal definition for desynchronization, we show how it can be induced in a network of originally synchronized oscillators.     

Mass appraisal of residential apartments: An application of Random forest for valuation and a CART-based approach for model diagnostics

To the best knowledge of authors, the use of Random forest as a potential technique for residential estate mass appraisal has been attempted for the first time. In the empirical study using data on residential apartments the method performed better than such techniques as CHAID, CART, KNN, multiple regression analysis, Artificial Neural Networks (MLP and RBF) and Boosted Trees. An approach for automatic detection of segments where a model significantly underperforms and for detecting segments with systematically under- or overestimated prediction is introduced. This segmentational approach is applicable to various expert systems including, but not limited to, those used for the mass appraisal.     

Positive N-periodic descriptor control systems

A small-gain theorem is presented for almost global stability of monotone control systems which are open-loop almost globally stable, when constant inputs are applied. The theorem assumes “negative feedback” interconnections. This typically destroys the monotonicity of the original flow and potentially destabilizes the resulting closed-loop system.     

Transition from split streamlines to dip-coating during Langmuir–Blodgett film deposition

Mono-molecular films of arachidic acid were deposited on glass slides using the Langmuir–Blodgett (LB) technique. The liquid subphases were dilute solutions of ZnSO₄ at different pH. Glass slides were treated to create contact angles (θ) ranging from approximately 15° for clean glass slides, to contact angles greater than 120° for slides treated with ferric stearate. Intermediate contact angles were created by immersing slides in solutions of Sigmacote^® of varying concentration. Very small contact angles, θ≈0° were obtained with clean glass slides at high pH values. LB deposition data and transfer ratios (TR) were recorded for up-stroke and down-stroke operation. During upstroke, TR increase with decreasing contact angles reaching a maximum TR close to 100% when the receding contact angle is approximately 15–20°. This is typical of the split-ejection flow pattern found during up-stroke. For very small contact angles, i.e. less than 10°, TR suddenly become zero indicating a transition to a dip-coating flow pattern. During down-stroke operation, TR is zero or negative for small contact angles, reaching a maximum TR approximately 100% for contact angles larger than 120°.     

Local effects in the vicinity of inserts in sandwich panels

The paper considers local bending effects induced in the vicinity of inserts in sandwich panels. Such local bending effects are associated with an increase of bending stresses in the sandwich faces and normal and shear stresses in the sandwich core. An earlier developed analytic model [Proceedings of the Sixth International Conference on Sandwich Structures (ICSS-6) (2002) 551] is adapted for the case of a sandwich panel with circular insert, with elastic properties differing from those of the core. The locally induced stresses in the faces and core due to presence of the insert are expressed via simple analytic relations (and charts) enabling an estimation of these local stresses. Finite element analysis is employed to demonstrate the applicability of the analytic model, and a good correspondence between the numerical and the analytical data is found. A study case related to marine applications, namely a circular insert in a sandwich deck panel used for mounting of a rigging fixture, is considered, and optimization of an existing design is carried out.     

A Comprehensive Assessment of Qualitative and Quantitative Prodromal Parkinsonian Features in Carriers of Gaucher Disease—Identifying Those at the Greatest Risk

Carriers of GBA1 gene variants have a significant risk of developing Parkinson’s disease (PD). A cohort study of GBA carriers between 40–75 years of age was initiated to study the presence of prodromal PD features. Participants underwent non-invasive tests to assess different domains of PD. Ninety-eight unrelated GBA carriers were enrolled (43 males) at a median age (range) of 51 (40–74) years; 71 carried the N370S variant (c.1226A > G) and 25 had a positive family history of PD. The Montreal Cognitive Assessment (MoCA) was the most frequently abnormal (23.7%, 95% CI 15.7–33.4%), followed by the ultrasound hyperechogenicity (22%, 95% CI 14–32%), Unified Parkinson’s Disease Rating Scale part III (UPDRS-III) (17.2%, 95% CI 10.2–26.4%), smell assessment (12.4%, 95% CI 6.6–20.6%) and abnormalities in sleep questionnaires (11%, 95% CI 5.7–19.4%). Significant correlations were found between tests from different domains. To define the risk for PD, we assessed the bottom 10th percentile of each prodromal test, defining this level as “abnormal”. Then we calculated the percentage of “abnormal” tests for each subject; the median (range) was 4.55 (0–43.5%). Twenty-two subjects had more than 15% “abnormal” tests. The limitations of the study included ascertainment bias of individuals with GBA-related PD in relatives, some incomplete data due to technical issues, and a lack of well-characterized normal value ranges in some tests. We plan to enroll additional participants and conduct longitudinal follow-up assessments to build a model for identifying individuals at risk for PD and investigate interventions aiming to delay the onset or perhaps to prevent full-blown PD.     

Identification of a Maturation Plasma Cell Index through a Highly Sensitive Droplet Digital PCR Assay Gene Expression Signature Validation in Newly Diagnosed Multiple Myeloma Patients

DNA microarrays and RNA-based sequencing approaches are considered important discovery tools in clinical medicine. However, cross-platform reproducibility studies undertaken so far have highlighted that microarrays are not able to accurately measure gene expression, particularly when they are expressed at low levels. Here, we consider the employment of a digital PCR assay (ddPCR) to validate a gene signature previously identified by gene expression profile. This signature included ten Hedgehog (HH) pathways’ genes able to stratify multiple myeloma (MM) patients according to their self-renewal status. Results show that the designed assay is able to validate gene expression data, both in a retrospective as well as in a prospective cohort. In addition, the plasma cells’ differentiation status determined by ddPCR was further confirmed by other techniques, such as flow cytometry, allowing the identification of patients with immature plasma cells’ phenotype (i.e., expressing CD19+/CD81+ markers) upregulating HH genes, as compared to others, whose plasma cells lose the expression of these markers and were more differentiated. To our knowledge, this is the first technical report of gene expression data validation by ddPCR instead of classical qPCR. This approach permitted the identification of a Maturation Index through the integration of molecular and phenotypic data, able to possibly define upfront the differentiation status of MM patients that would be clinically relevant in the future.     

Isolating Linum usitatissimum L. Nuclear DNA Enabled Assembling High-Quality Genome

High-quality genome sequences help to elucidate the genetic basis of numerous biological processes and track species evolution. For flax (Linum usitatissimum L.)—a multifunctional crop, high-quality assemblies from Oxford Nanopore Technologies (ONT) data were unavailable, largely due to the difficulty of isolating pure high-molecular-weight DNA. This article proposes a scheme for gaining a contiguous L. usitatissimum assembly using Nanopore data. We developed a protocol for flax nuclei isolation with subsequent DNA extraction, which allows obtaining about 5 μg of pure high-molecular-weight DNA from 0.5 g of leaves. Such an amount of material can be collected even from a single plant and yields more than 30 Gb of ONT data in two MinION runs. We performed a comparative analysis of different genome assemblers and polishers on the gained data and obtained the final 447.1-Mb assembly of L. usitatissimum line 3896 genome using the Canu—Racon (two iterations)—Medaka combination. The genome comprised 1695 contigs and had an N50 of 6.2 Mb and a completeness of 93.8% of BUSCOs from eudicots_odb10. Our study highlights the impact of the chosen genome construction strategy on the resulting assembly parameters and its eligibility for future genomic studies.     

Autoimmune Neutropenia and Immune-Dysregulation in a Patient Carrying a TINF2 Variant

In recent years, the knowledge about the immune-mediated impairment of bone marrow precursors in immune-dysregulation and autoimmune disorders has increased. In addition, immune-dysregulation, secondary to marrow failure, has been reported as being, in some cases, the most evident and early sign of the disease and making the diagnosis of both groups of disorders challenging. Dyskeratosis congenita is a disorder characterized by premature telomere erosion, typically showing marrow failure, nail dystrophy and leukoplakia, although incomplete genetic penetrance and phenotypes with immune-dysregulation features have been described. We report on a previously healthy 17-year-old girl, with a cousin successfully treated for acute lymphoblastic leukemia, who presented with leukopenia and neutropenia. The diagnostic work-up showed positive anti-neutrophil antibodies, leading to the diagnosis of autoimmune neutropenia, a slightly low NK count and high TCR-αβ+-double-negative T-cells. A next-generation sequencing (NGS) analysis showed the 734C>A variant on exon 6 of the TINF2 gene, leading to the p.Ser245Tyr. The telomere length was short on the lymphocytes and granulocytes, suggesting the diagnosis of an atypical telomeropathy showing with immune-dysregulation. This case underlines the importance of an accurate diagnostic work-up of patients with immune-dysregulation, who should undergo NGS or whole exome sequencing to identify specific disorders that deserve targeted follow-up and treatment.