Phylogenetic scanning: a computer-assisted algorithm for mapping gene conversions and other recombinational events

An algorithm, 'phylogenetic scanning', is described for mapping gene conversion events where comparative DNA sequence data are available from different species. In this algorithm, sets of hypothetical phylogenetic trees are constructed that describe possible sequence relationships due to gene conversions in different species lineages; these trees are then evaluated by the principle of parsimony at intervals in the sequence alignment. When used to map gene conversion events that occurred between the pair of gamma-globin genes of higher primates, the algorithm gives results nearly identical to those obtained using a tedious manual approach. Suggestions are also provided for adaptation of this procedure to the analysis of other recombination events.     

Experience in testing the Motif interface

The testing and quality assurance of the Motif 1.0 graphical user-interface software are described. The testing goals, which fell into three general categories (code coverage, defect-density, and defect-arrival rate), and a deliverable formal test suite are examined. The three phases of the testing process-evaluation, test development, and regression testing-and the tools used in testing are discussed     

Comments on `Semianalytic BER evaluation by simulation for noisynonlinear bandpass channels'

Pent et al. (see ibid., vol.SAC-6, no.1, p.34-41, 1988) proposed a semianalytic method for performance evaluation of communication channels with a bandpass nonlinearity. This method is based on a decomposition of the composite signal at the output of the nonlinear device which leads to the definition of an equivalent nonlinearity. In Pent et al. such an equivalent model is evaluated via numerical integration. In the present comment it is shown that a suitable series expansion of the nonlinearity characteristic yields to an evaluation of the equivalent nonlinearity in closed form     

THERMAL REACTIONS OF WHOLE CRUDE OILS AND RELATED MODEL COMPOUNDS

The quantities of olefins, polyaromatic hydrocarbons and char formed during thermal decomposition in closed systems of alkylbenzenes are substantially reduced if the decomposition takes place in the presence of a good acceptor molecule such as pyrene or adamantane. The chemistry seems to be applicable to the upgrading of whole crude oils by a thermal treatment at 425-450°C in a closed system for 20-25 minutes.     

IDENTIFICATION OF VOLATILE COMPOUNDS FROM RIPE MAYHAW FRUIT (CRATAEGUS OPACA,C. AESTIVALIS,AND C. RUFULA)1

Steam volatile fractions obtained from three commercial mayhaw cultivars and two native selections were analyzed by GC and GC/MS. Twenty-four compounds were identified. The nine major components, which comprised 70–80% of the volatile fraction, were hexanal, butyl acetate, (E)-2-hexenal, butyl butyrate, linalool, butyl hexanoate, methyl octanoate, pentyl hexanoate, and hexyl hexanoate. Minor constituents included eight esters, four terpenes, two benzenoid compounds and (E)-2-hexenol.     

BerlinTainment: an agent-based context-aware entertainment planning system

Service providers, especially in the mobile entertainment domain, are facing increasing competition. The ability to design, develop, and deploy unique context-aware entertainment services fast and easily as well as the capability to provide intuitive user interfaces becomes essential for market players. Furthermore, today's mobile world is made up of heterogeneous networks accessible via various devices with different characteristics. Progressive users have the desire to utilize the same services and access the same information content on all available devices. At the same time, service providers have to diversify their services in order to remain competitive and attract the various customer segments making up the mass market. We introduce an agent-based serviceware framework to assist service providers in developing innovative services, thus reducing the time to market of the respective applications. The realized serviceware framework offers personalization, location awareness, and the multi-access service platform, a flexible solution for ubiquitous service access. Thus, our solution allows a heterogeneous landscape of end devices to access an application server's mobile services in a multimodal, multilingual, and multimedia-based manner. We describe the utilization of the different modules of the service framework as well as the BerlinTainment application, an entertainment planning system based on the framework.     

The incompatibility of knowledge regimes: consequences of the material world for cross-domain work

In this paper, we argue that successful integration of knowledge across work domains in the short-term can mask the generation of long-term consequences. We explore a setting, the introduction of environmental considerations into semiconductor manufacturing, where the eventual adoption of common measurement artifacts and associated practices enabled knowledge integration, but failed to address significant underlying consequences. Drawing from observational, interview, and archival data we develop an understanding of the work practices of the Tech and EnviroTech groups as structured by the material world and broader collective conventions. We introduce the concept of knowledge regime to outline the differences in knowledge across these work domains. More specifically, we find that differences in the causal specificity and developmental time horizon of knowledge and the measurement artifacts that result contribute to the relative power of one knowledge regime over another. Understanding these sources of incompatibility provides insight into the design requirements of information systems as boundary objects for knowledge integration, but also specifies the potential limits to any design effort.