A multiplex ligation detection assay for the characterization of Salmonella enterica strains

A proof of principle of a multi-target assay for genotyping Salmonella has been developed targeting 62 genomic marker sequences of Salmonella related to pathogenicity. The assay is based on multiplex ligation detection reaction (LDR) followed by customized ArrayTube? microarray detection. The feasibility of the developed assay was verified in a method comparison study with conventional PCR using 16 Salmonella 'test' strains comprising eight serovars. Subsequently, the feasibility of the LDR microarray assay was also tested by analyzing 41 strains belonging to 23 serovars. With the exception of four serovars each serovar was characterized by a unique virulence associated gene repertoire. The LDR microarray platform proved to be a convenient, rapid and easy to use tool with potential in tracing a Salmonella contamination in the food chain, for outbreak studies, and to provide data for risk assessors that support bio-traceability models.     

Genome-wide association study for milk infrared wavenumbers

Individual wavenumbers of the infrared (IR) spectra of bovine milk have been shown to be moderately to highly heritable. The objective of this study was to identify genomic regions associated with individual milk IR wavenumbers. This is expected to provide information about the genetic background of milk composition and give insight in the relation between IR wavenumbers and milk components. For this purpose, a genome-wide association study was performed for a selected set of 50 individual IR wavenumbers measured on 1,748 Dutch Holstein cows. Significant associations were detected for 28 of the 50 wavenumbers. In total, 24 genomic regions distributed over 16 bovine chromosomes were identified. Major genomic regions associated with milk IR wavenumbers were identified on chromosomes 1, 5, 6, 14, 19, and 20. Most of these regions also showed significant associations with fat, protein, or lactose percentage. However, we also identified some new regions that were not associated with any one of these routinely collected milk composition traits. On chromosome 1, we identified 2 new genomic regions and hypothesized that they are related to variation in milk phosphorus content and orotic acid, respectively. On chromosome 20, we identified a new genomic region that seems to be related to citric acid. Identification of genomic regions associated with milk phosphorus content, orotic acid, and citric acid suggest that the milk IR spectra contain direct information on these milk components. Consequently milk IR analyses probably can be used to predict these milk components, which have low concentrations in milk; this can lead to novel applications of milk IR spectroscopy for dairy cattle breeding and herd management.     

Excess concentration,electron and hole currents in an epitaxial emitter

Algorithms for calculating the emitter hole and electron currents in the case of an n⁺n^? epitaxial emitter have been published by Yu [2] and Rofail et al. [3]. Both algorithms are restricted to a small ratio of hole to electron current whereas Yu's algorithm is further restricted by the assumption of a constant electric field in the epilayer.In the present paper an algorithm is presented in which both restrictions have been removed and which is valid from low through high injection. The assumption of quasineutrality in the epilayer, which is used in the present algorithm, is veryfied using Adlers criterium [4]. Calculation results are presented for a structure treated by Poorter [1] and a comparison is made with his results.     

The local approximate output regulation problem: convergence region estimates

In this paper, the problem of local approximate output regulation is considered. The presented results answer the question: given a controller solving the local approximate output regulation problem, how to estimate the set of initial conditions for which approximate output regulation occurs. The results are illustrated by a disturbance rejection problem for the TORA system. Copyright © 2004 John Wiley & Sons, Ltd.     

Effects of vasoactive intestinal polypeptide on heart rate in relation to vagal cardioacceleration in conscious dogs

OBJECTIVE: The vagal cardiac accelerator (VCA) system takes part in the nervous control of the heart rate. In the present study we tried to adduce evidence that vasoactive intestinal polypeptide (VIP) contributes to vagally induced cardioaccelerations. METHODS: The effect of VIP on heart rate and arterial blood pressure was investigated after unmasking the inherent VCA activity by blocking the sympathetic accelerator and vagal decelerator influences on heart rate in conscious dogs. RESULTS: Following intravenous administration of VIP (10 micrograms i.v.) the heart rate increased by 43.6 +/- 6.7 (28.1 +/- 4.7%), from 165.6 +/- 8.5 to 209.1 +/- 7.0 beats/min (P < 0.001) and the mean arterial blood pressure decreased by 47.5 +/- 3.2 (37.9 +/- 3.0%), from 126.6 +/- 2.6 to 79.1 +/- 4.9 mmHg (P < 0.001) (n = 11). After VCA activity was reflexly enhanced by alpha 1-adrenoceptor stimulation with methoxamine, VIP increased heart rate by 36.9 +/- 7.3 (21.5 +/- 4.6%), from 179.8 +/- 5.2 to 216.7 +/- 5.8 beats/min (P < 0.001) and decreased mean arterial pressure by 79.1 +/- 6.4 (46.7 +/- 3.5%), from 168.2 +/- 4.1 to 89.1 +/- 5.0 mmHg (P < 0.001). Hence, the VIP-induced tachycardia, expressed in relative values, shows a significant attenuation after the administration of methoxamine (P < 0.05). The increase in heart rate induced by VIP appeared to be inversely related to the prevailing VCA activity, both before (r = -0.744, P = 0.009) and after methoxamine (r = -0.689, P = 0.019). The VIP-induced tachycardia is certainly not reflexly induced by the fall in arterial pressure, because intracoronary administration of VIP (0.5 microgram i.c.) caused an appreciable increase in the heart rate by 63.7 +/- 13.0 (46.4 +/- 10.4%), from 143.0 +/- 8.1 to 208.7 +/- 12.0 beats/min (P < 0.005), whereas the mean arterial pressure only slightly changed (-7.7 +/- 2.0 mmHg) (P < 0.05) (n = 6). In addition, VIP (10 micrograms i.v.) also caused a tachycardia in vagotomized dogs with blocked beta-adrenergic and muscarinic receptors. The administration of the VIP antagonists [D-p-CI-Phe6, Leu17]-VIP (50-150 micrograms i.c.) and [Lys1, Pro2,5, Leu17]-VIP (20 micrograms i.c.) did not result in alterations in VCA activity nor did the VIP antagonists block the VCA reflex response to a rise in arterial pressure. However, none of the VIP antagonists reduced the VIP-induced tachycardia either. CONCLUSION: Vasoactive intestinal polypeptide is likely to play a part in the vagal cardiac accelerator system. However, conclusive evidence for its role as the terminal transmitter in the VCA pathway will have to wait for the availability of a specific cardiac VIP receptor antagonist.     

Prognostic significance of tumor markers in colorectal cancer patients: DNA index, S-phase fraction, p53 expression, and Ki-67 index

Risk of colorectal cancer recurrence has traditionally been determined by use of pathologic staging. However, it is apparent that subgroups of patients exist within tumor stages whose clinical behavior differs. This study was undertaken to identify tumor-associated factors that might be predictive of outcome in patients with intermediate stages who will benefit the most from postsurgical adjuvant therapy. Seventy patients with stage II and III colorectal cancer were assessed for DNA index, S-phase fraction, p53 expression, and Ki-67 index. Tumor recurrence was analyzed by means of nonparametric tests and Cox proportional hazard models incorporating standard clinical and pathologic criteria. Of the four prognostic markers evaluated, Ki-67 index was significantly associated with disease recurrence (P = 0.02), whereas DNA index, S-phase fraction, and p53 expression were not. After stratification by tumor stage, significant associations between Ki-67 index and disease recurrence were retained in stage II tumors (P = 0.01) but not in stage III tumors (P = 0.23). Cox proportional hazard regression analysis indicated that among stage II patients, those with a Ki-67 index >45% were associated with 6.5 times greater risk for disease recurrence than those with a Ki-67 index >/=45%. It was concluded that an elevated Ki- 67 index is associated with an increased risk of tumor recurrence in stage II colorectal cancer.     

Determining suitability of a fly ash for silica extraction and zeolite synthesis

Zeolitic material is obtained from fly ash both by direct conversion of the ash or from SiO₂ extracts obtained from fly ash. This study focuses on determining the suitability of a fly ash for SiO₂ extraction and for zeolite synthesis by direct conversion. The SiO₂ extraction experiments from different fly ashes show that the main parameters governing the SiO₂ extraction are: (a) a high bulk SiO₂ content (>52%, for obtaining an extraction yield of 100 g SiO₂ kg^?1) in the starting fly ash, (b) a high proportion (>55%) of the bulk SiO₂ present in the degradable glass matrix and the highly soluble opaline fraction, and (c) a high bulk SiO₂/Al₂O₃ ratio (>2.0) of the fly ash. The results from experiments of zeolite synthesis by direct conversion demonstrate that the most important criteria for the selection of a fly ash for this process are: (a) a high content of Al₂O₃ and SiO₂(>65%) (b) a high glass content (>63%) and (c) relatively low SiO₂/Al₂O₃ ratio (<2.0). Multivariate analysis confirms the importance of the above‐mentioned variables and shows some additional variables that have influence on ash behaviour under alkaline conditions. It quantifies the use of those variables for determining the suitability of ashes for SiO₂ extraction and zeolite synthesis and is able to distinguish between the two. Copyright © 2004 Society of Chemical Industry     

The Holy Grail of science policy: Exploring and combining bibliometric tools in search of scientific excellence

Evaluation studies of scientific performance conducted during the past years more and more focus on the identification of research of the 'highest quality', 'top' research, or 'scientific excellence'. This shift in focus has lead to the development of new bibliometric methodologies and indicators. Technically, it meant a shift from bibliometric impact scores based on average values such as the average impact of all papers published by some unit to be evaluated towards indicators reflecting the topof the citation distribution, such as the number of 'highly cited' or 'top' articles. In this study we present a comparative analysis of a number of standard and new indicators of research performance or 'scientific excellence', using techniques applied in studies conducted by CWTS in recent years. It will be shown that each type of indicator reflects a particular dimension of the general concept of research performance. Consequently, the application of one single indicator only may provide an incomplete picture of a unit's performance. It is argued that one needs to combine the various types of indicators in order to offer policy makers and evaluators valid and useful assessment tools. This revised version was published online in August 2006 with corrections to the Cover Date.