Parallel Computation of High-Dimensional Robust Correlation and Covariance Matrices

The computation of covariance and correlation matrices are critical to many data mining applications and processes. Unfortunately the classical covariance and correlation matrices are very sensitive to outliers. Robust methods, such as Quadrant Correlation (QC) and the Maronna method, have been proposed. However, existing algorithms for QC only give acceptable performance when the dimensionality of the matrix is in the hundreds; and the Maronna method is rarely used in practice because of its high computational cost. In this paper we develop parallel algorithms for both QC and the Maronna method. We evaluate these parallel algorithms using a real data set of the gene expression of over 6000 genes, giving rise to a matrix of over 18 million entries. In our experimental evaluation, we explore scalability in dimensionality and in the number of processors, and the trade-offs between accuracy and computational efficiency. We also compare the parallel behaviours of the two methods. From a statistical standpoint, the Maronna method is more robust than QC. From a computational standpoint, while QC requires less computation, interestingly the Maronna method is much more parallelizable than QC. After a thorough experimentation, we conclude that for many data mining applications, both QC and Maronna are viable options. Less robust, but faster, QC is the recommended choice for small parallel platforms. On the other hand, the Maronna method is the recommended choice when a high degree of robustness is required, or when the parallel platform features a large number of processors (e.g., 32).     

Interference effects from grammatically unavailable constituents during sentence processing.

Evidence from 3 experiments reveals interference effects from structural relationships that are inconsistent with any grammatical parse of the perceived input. Processing disruption was observed when items occurring between a head and a dependent overlapped with either (or both) syntactic or semantic features of the dependent. Effects of syntactic interference occur in the earliest online measures in the region where the retrieval of a long-distance dependent occurs. Semantic interference effects occur in later online measures at the end of the sentence. Both effects endure in offline comprehension measures, suggesting that interfering items participate in incorrect interpretations that resist reanalysis. The data are discussed in terms of a cue-based retrieval account of parsing, which reconciles the fact that the parser must violate the grammar in order for these interference effects to occur. Broader implications of this research indicate a need for a precise specification of the interface between the parsing mechanism and the memory system that supports language comprehension. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Learning With Weblogs: Enhancing Cognitive and Social Knowledge Construction

This study investigated the impact of weblog use on individual learning in the context of university senior-level business education. As an emergent form of personal communication, weblogs enable people to publish their thoughts as webpages, and to share information and knowledge. Recognizing the potential impact of weblogs on knowledge expression and sharing, this research sought to empirically examine whether the continuous use of weblogs as online learning logs would affect student learning performance. The assumption was that effective use of weblogs promoted the constructivist models of learning by supporting both cognitive and social knowledge construction, and by reinforcing individual accountability in learning. Results from an Information Systems undergraduate course with 31 participants indicated that the performance of students' weblogs was a significant predictor of the learning outcome (while traditional coursework was not). Moreover, individuals' cognitive construction effort to build their own mental models and social construction effort to further enrich/expand knowledge resources appeared to be two key aspects of the constructivist learning with weblogs. Our results imply the potential benefit of using weblogs as a knowledge construction tool and a social learning medium     

Endothelial selectins and vascular cell adhesion molecule-1 promote hematopoietic progenitor homing to bone marrow

The adhesive mechanisms allowing hematopoietic progenitor cells (HPC) homing to the bone marrow (BM) after BM transplantation are poorly understood. We investigated the role of endothelial selectins and vascular cell adhesion molecule-1 (VCAM-1) in this process. Lethally irradiated recipient mice deficient in both P-and E-selectins (P/E-/-), reconstituted with minimal numbers (相似文献   

Zum Einfluß extrazellulärer polymerer Substanzen bei der mikrobiologisch beeinflußten Korrosion

The influence of extra-cellular polymeric substances in microbiologically influenced corrosion Unexpected pitting failures in copper potable water installations have occurred in some countries (Germany, Sweden, Scotland, South-West England, Saudi-Arabia) in the mid-eighties. These failures could not be expected in a single case based on the chemical composition of the potable water. Further typical manifestation characteristics of this microbiologically influenced corrosion have been i.) an uptake of dissolved and undissolved copper species in an obsolete, non regular fashion, ii.) black layers of copper(II)-oxide on the inner tube surface, accompanied by posniakite and malachite in the pitting areas, and, iii.) the detection of extracellular polymeric substances (EPS). These EPS consist partly of polysaccharides. They could either be produced by microorganisms within the potable water installation or be transported in a dissolved or undissolved state into the installation. Consequently, they sediment on the inner surfaces of the copper tubes. The physico-chemical properties of some kinds of EPS, especially their membrane properties and their cation selectivity, play a key role in this corrosion process. This is shown exemplarily performing diffusion potential measurements and contact corrosion experiments.     

The DEAH-box splicing factor Prp16 unwinds RNA duplexes in vitro

BACKGROUND: During pre-mRNA splicing, dynamic rearrangement of RNA secondary structure within the spliceosome is crucial for intron recognition and formation of the catalytic core. Splicing factors belonging to the DExD/DExH-box family of RNA-dependent ATPases are thought to have a central role in directing these rearrangements by unwinding RNA helices. Proof of this hypothesis has, however, been conspicuously lacking. RESULTS: Prp16 is a DEAH-box protein that functions in the second step of splicing in vitro. Using various RNA duplexes as substrate, we have shown that Prp16 has an ATP-dependent RNA unwinding activity. This activity is independent of sequence in either the single-stranded or duplexed regions of the RNA substrate. A mutation (prp16-1) near the ATP-binding motif of Prp16 inhibits both the RNA-dependent ATPase activity and the ATP-dependent RNA unwinding activity. CONCLUSIONS: Our findings provide strong biochemical evidence that Prp16 can disrupt a duplexed RNA structure on the spliceosome. Because the purified protein lacks sequence specificity in unwinding RNA duplexes, targeting of the unwinding activity of Prp16 in the spliceosome is likely to be determined by other interacting protein factors. The demonstration of unwinding activity will also help our understanding of how the fidelity of branchpoint recognition is controlled by Prp16.     

Local mobility within villin 14T probed via heteronuclear relaxation measurements and a reduced spectral density mapping

Villin 14T, a representative domain from the actin severing and bundling protein villin, binds calcium ions and actin monomers. To begin to understand the contributions of mobility to the villin-calcium and villin-actin interactions, relaxation rates for magnetization involving the amide nitrogens and protons have been measured for 15N-labeled villin 14T in solution. Although we have measured the complete set of rates required for a full spectral density map, difficulties in the accurate measurement of relaxation rates for antiphase coherence and two-spin order led us to consider a reduced mapping formalism. From the reduced spectral density map, a model-free analysis, or directly from the measured Nx,y relaxation rates, local variations in mobility along the backbone of villin 14T have been revealed. Fast motions are evident not only at the amino and carboxyl termini but also in the turn between strands beta 4 and beta 5 of the central beta-sheet and in the turn between helix alpha 3 and strand beta 7. Slower motions are suggested for the turn between strands beta 2 and beta 3. Motions on the microsecond to millisecond time scale have been probed directly by examining the dependence of the proton transverse relaxation rate on the spin-locking field strength. Leu11 shows a strong dependence on field strength, implying conformational exchange with a time constant of 125 +/- 69 microseconds. The backbone at the actin-binding interface appears to be rather rigid.     

Network politics in an educational organization

The electronic mail (EM) network in a large, multi-campus community college district was used by some employees to gain support for positions contrary to those of the leadership. The case study offered an opportunity to look at technology within an organizational setting. It raised questions about the loose coupling of the educational organization's technical and authority systems, about the strength of coupling among employee groups during the incident, about the boundaries of the EM political activists, and about the power manifested within educational organization's technical and authority systems. A variety of research methods (stages of event progression, fantasy types associated with consciousness-building, and evidence of user technical and rhetorical skills) were used to answer questions about the organization's loosely coupled systems during the EM political incident. Notes were taken of conversations and more formal interviews. From this the technical and authority systems of the institution were described and compared. Results indicated that (1) the loose coupling of the technical and the authority systems made the EM political incident possible; (2) employees were more tightly coupled on organizational goals and more loosely coupled on organizational means; (3) political activists did not make full use of the EM's political medium potential; and (4) when the college district's administration refused to limit anyone's use of the EM network, they reinforced the integrity of both the authority and the technical systems.

Implications included: (1) the potential of some of the research methods for EM study, especially fantasy theme analysis; (2) a political interpretation of EM language, especially flaming; (3) the importance of technical and rhetorical skills for mature EM users; and (4) the role of the authority and technical systems in the debate about appropriate EM network use within an organization.     

The moderating influence of attitude strength on the susceptibility to context effects in attitude surveys.

In 3 experiments, the authors assessed whether attitude strength moderates the susceptibility of attitudes to item context effects in surveys. In Experiment 1, respondents completed multiple measures of attitude strength. Three weeks later, respondents participated in a context experiment. Results revealed that respondents with weak attitudes exhibited significantly larger context effect for 1 of 2 issues. In Experiment 2, the results of Experiment 1 were conceptually replicated by use of measures of interattitudinal embeddedness to assess attitude strength. In Experiment 3, significant strength-moderated context effects were found when attitude strength was assessed in a multi-item, multidimensional manner but not when it was assessed with a single item. Discussion focuses on measurement and theoretical issues related to the moderation and mediation of context effects in attitude surveys. (PsycINFO Database Record (c) 2010 APA, all rights reserved)