Amoebapore homologs of Caenorhabditis elegans

It is shown that the Caenorhabditis elegans genome contains several distantly related members of the gene family of saposin-like proteins. The putative products of genes T07C4.4, T08A9.7A, T08A9.7B, T08A9.8, T08A9.9, T08A9.10 are similar to the amoebapores of Entamoeba histolytica, granulysin of cytotoxic T lymphocytes and a putative amoebapore-related protein of the liver fluke Fasciola hepatica inasmuch as they consist of only a single saposin-like domain and a secretory signal peptide. The saposin-like domain of protein T07C4.4, which is most closely related to NK-lysin and granulysin, has been expressed in Escherichia coli and the recombinant protein was shown to have a circular dichroism spectrum consistent with the helix bundle structure characteristic of saposin-like domains. Recombinant T07C4.4 protein was found to have antibacterial activity, suggesting that these amoebapore homologs may play a role in antibacterial mechanisms of C. elegans.     

The detection of oligonucleotide N3'-->P5' phosphoramidate/RNA duplexes with capillary gel electrophoresis

Oligonucleotide N3'-->P5' phosphoramidates (3'-phosphoramidates) are DNA analogs that are presently under investigation as potential therapeutic agents. These compounds may also hold promise as a diagnostic tool. Here, we describe a rapid method for the analysis of single-stranded RNA fragments utilizing 3'-phosphoramidate oligonucleotides as probes in conjunction with capillary gel electrophoresis (CGE). 3'-Phosphoramidate 9-mers were mixed with complimentary RNA, and CGE was used to monitor duplex formation. Complimentary strands of RNA and 3'-phosphoramidate formed duplexes that gave unique relative mobilities based on an internal standard. The ability of CGE to discriminate between perfect duplexes and duplexes that contain a base mismatch was also investigated. However, the primary focus of this work was to determine CGE's ability to detect the presence of the 3'-phosphoramidates/RNA duplex under routine electrophoretic running conditions. Polyacrylamide gel electrophoresis analysis was utilized to verify duplex formation.     

Laser interferometer with fine-focused beams to monitor the spatial position of an object

Analogies with interferometers using a light source with low temporal coherence are used to analyze the principles of the construction of laser interferometers with averaging over the photodetector aperture, whose sensitivity to the position of an object being monitored at the maximum of the output signal is as good as that of low-coherence interferometry and tomography. Pis’ma Zh. Tekh. Fiz. 24, 19–24 (February 26, 1998)     

Trp82 and Tyr332 are involved in two quaternary ammonium binding domains of human butyrylcholinesterase as revealed by photoaffinity labeling with [3H]DDF

Purified butyrylcholinesterase (BuChE) was photolabeled by [3H]-p-N, N-dimethylamino benzene diazonium ([3H]DDF) to identify the quaternary ammonium binding sites on this protein [Ehret-Sabatier, L. , Schalk, I., Goeldner, M., and Hirth, C. (1992) Eur. J. Biochem. 203, 475-481]. The covalent photoincorporation occurs with a stoichiometry of one mole of probe per mole of inactivated site and could be fully prevented by several cholinergic inhibitors such as tacrine or tetramethylammonium. After complete deglycosylation of the enzyme using N-glycosidase F, the alkylated protein was trypsinolyzed and the digests were analyzed by HPLC coupled to ES-MS. A direct comparison of tryptic fragments from labeled and unlabeled BuChE allowed us to identify the tryptic peptide Tyr61-Lys103 as carrying the probe. Purification of the labeled peptides by anion-exchange chromatography gave a major radioactive peak which was further fractionated by reversed-phase HPLC leading to three, well-resolved, radioactive peaks. Microsequencing revealed that two of these peaks contained an overlapping sequence starting at Tyr61, while the third peak contained a sequence extending from Thr315. Radioactive signals could be unambiguously attributed to positions corresponding to residues Trp82 and Tyr332. This labeling study establishes the existence of two different binding domains for quaternary ammonium in BuChE and exemplifies additional cation/pi interactions in cholinergic proteins. This work strongly supports the existence of a peripheral anionic site in BuChE, implying residue Tyr332 as a key element.     

Automated derivation of time bounds in uniprocessor concurrentsystems

The successful development of complex real-time systems depends on analysis techniques that can accurately assess the timing properties of those systems. This paper describes a technique for deriving upper and lower bounds on the time that can elapse between two given events in an execution of a concurrent software system running on a single processor under arbitrary scheduling. The technique involves generating linear inequalities expressing conditions that must be satisfied by all executions of such a system and using integer programming methods to find appropriate solutions to the inequalities. The technique does not require construction of the state space of the system and its feasibility has been demonstrated by using an extended version of the constrained expression toolset to analyze the timing properties of some concurrent systems with very large state spaces     

The influence of the ferritic and austenitic phases and of silicon on the Corrosion resistance of alloyed cast steels

The paper deals with the influence of the α/gamma; phase ratio and silicon on the corrosion resistance of low carbon alloyed cast steels in strongly oxidizing media. Electrochemical investigations in 65% HNO₃ + 5g Cr⁶⁺ ions/I showed that none of the four tested cast steels, with γ_R = 100%, γ_R = 75%, γ_R = 50% and γ_R = 0%, achieved a passive state, and that the corrosion process was under cathodic control. Under such conditions the calhodic activation overpotential is considerably greater than the anodic activation overpotential, and, as well as this, the Tafel coefficient for a cathodic reaction has higher values than those which are characteristic for an anodic reaction. The austenitic cast steel is the most resistant to corrosion, since for the corrosion process to take place the greatest activation energy is needed. The results of investigations of corrosion resistance in 12M HNO₃, at 115°C, for 240 hours, confirmed the results of the electrochemical measurements and the predominant role of the austenitic cast steel with γ_R = 100%. By means of AES analysis it was found that the good resistance to corrosion of such a cast steel is based on the building up of a thin mechanically-protecting barrier, which mainly consists of silicon.     

Carbon fibre composites based on polyimide/silica ceramers: aspects of structure-properties relationship

Polyimide/silica ceramers, based on the products of the hydrolysis of tetraethoxysilane (TEOS) and a commercial poly(amic acid) solution, were used to fabricate unidirectional carbon fibre composites, which were subsequently evaluated with respect to thermal and mechanical properties. There is evidence to suggest that the silica component of these ceramers is present as dispersed discrete particles at low silica concentration (i.e. 7 wt%) and as fine interconnected domains trapped within the polyimide matrix at higher silica content (i.e. 14 wt%). The dimensions of the silica domains were in the region of 7–20 nm. Carbon fibre composites produced from ceramer solutions (CF/ceramers) were found to exhibit lower thermal expansion and a greater retention of flexural and interlaminar shear properties at elevated temperature than the corresponding polyimide-matrix composites (CF/polyimide). The properties of CF/ceramers were generally better for systems containing the higher amount of silica and were improved further by lowering the pH value of the precursor ceramer solution. This is believed to have resulted from the enhanced fluidity of the ceramer gel within the pre-impregnated fibres, giving rise to a higher packing density of the fibres and a more homogeneous distribution of fibres. CF/ceramers were also found to exhibit a better thermal oxidative stability at 350°C than the corresponding CF/polyimide, although a substantial amount of porosity developed in the case of ceramers with the higher silica content.     

Feedback Insertion-Deletion Codes

Problems of Information Transmission - A new problem of transmitting information over the adversarial insertion-deletion channel with feedback is introduced. Assume that the encoder transmits $$n$$...