KRAS Promoter G-Quadruplexes from Sequences of Different Length: A Physicochemical Study

DNA G-quadruplexes (G4s) form in relevant genomic regions and intervene in several biological processes, including the modulation of oncogenes expression, and are potential anticancer drug targets. The human KRAS proto-oncogene promoter region contains guanine-rich sequences able to fold into G4 structures. Here, by using circular dichroism and differential scanning calorimetry as complementary physicochemical methodologies, we compared the thermodynamic stability of the G4s formed by a shorter and a longer version of the KRAS promoter sequence, namely 5′-AGGGCGGTGTGGGAATAGGGAA-3′ (KRAS 22RT) and 5′-AGGGCGGTGTGGGAAGAGGGAAGAGGGGGAGG-3′ (KRAS 32R). Our results show that the unfolding mechanism of KRAS 32R is more complex than that of KRAS 22RT. The different thermodynamic stability is discussed based on the recently determined NMR structures. The binding properties of TMPyP4 and BRACO-19, two well-known G4-targeting anticancer compounds, to the KRAS G4s were also investigated. The present physicochemical study aims to help in choosing the best G4 target for potential anticancer drugs.     

A novel mathematical formulation for solving the dynamic and discrete berth allocation problem by using the Bee Colony Optimisation algorithm

Applied Intelligence - Berth allocation is one of the crucial points for efficient management of ports. This problem is complex due to all possible combinations for assigning ships to available...     

Correlations between microstructural characterization and thermal properties of well defined poly(ε-caprolactone) samples by ring opening polymerization with neutral and cationic bis(2,4,6-triisopropylphenyl)tin(IV) compounds

In this paper a study of correlations between the microstructure of well defined poly(ε-caprolactone) (PCL) samples and their physical properties such as thermal degradation, crystallization kinetics and melting behavior is described. The PCL samples were obtained in the presence of the compound benzyl-methoxy-bis(2,4,6-triisopropylphenyl)tin (1), acting as single-site and living initiator, as well as in the presence of compounds Tip₂SnRR′ [Tip = 2,4,6-triisopropylbenzene; R = R′ = CHCH₂ (2); R = CH₂Ph, R′ = Br (3)] activated by ionizing agents. PCL samples having different end groups, molecular weight and molecular weight distribution were obtained. The samples were fully characterized by GPC and NMR. The thermal degradation of the synthesized samples were studied by thermogravimetric analysis (TGA) in air flow. The experimental results suggested that the presence of ester chain end groups has a beneficial effect on the thermal stability of the PCL samples, independently on the molecular weights and molecular weight distribution. The crystallization behavior was studied in isothermal conditions at 37 °C, 40 °C, and 43 °C through differential scanning calorimetry (DSC). In this case, either the molecular weight (M_w) or the polydispersivity index (PDI) have a significant effect on the kinetics of crystallization of PCLs.     

Endogenous Enzymatic Activity in Dentin Treated with a Chitosan Primer

The aim of this study was to evaluate the effect of different concentrations of chitosan polymer on dentinal enzymatic activity by means of gelatin and in situ zymography. Human dentin was frozen and ground in a miller. Dentin powder aliquots were demineralized with phosphoric acid and treated with three different concentrations of lyophilized chitosan polymer (1, 0.5 and 0.1 wt%) dissolved in distilled water. Dentin proteins were extracted from each experimental group and electrophoresed under non-reducing conditions in 10% SDS-PAGE containing fluorescein-labeled gelatin. After 48 h in the incubation buffer at 37 °C, proteolytic activity was registered under long-wave UV light scanner and quantified by using Image J software. Furthermore, additional teeth (n = 4) were prepared for the in situ zymographic analysis in unrestored as well as restored dentin pretreated with the same chitosan primers. The registered enzymatic activity was directly proportional to the chitosan concentration and higher in the restored dentin groups (p < 0.05), except for the 0.1% chitosan primer. Chitosan 0.1% only showed faint expression of enzymatic activity compared to 1% and 0.5% concentrations. Chitosan 0.1% dissolved in water can produce significant reduction in MMPs activity and could possibly contribute to bond strength preservation over time.     

Confinement effects on optical phonons in polar tetrapod nanocrystals detected by resonant inelastic light scattering

We investigated CdTe nanocrystal tetrapods of different sizes by resonant inelastic light scattering at room temperature and under cryogenic conditions. We observe a strongly resonant behavior of the phonon scattering with the excitonic structure of the tetrapods. Under resonant conditions we detect a set of phonon modes that can be understood as confined longitudinal-optical phonons, surface-optical phonons, and transverse-optical phonons in a nanowire picture.     

Nonylphenol polyethoxylate degradation in aqueous waste by the use of batch and continuous biofilm bioreactors

An aerobic bacterial consortium (Consortium A) was recently obtained from textile wastewater and was capable of degrading 4-nonylphenol and nonylphenol polyethoxylates (NPnEOs). In the perspective of developing a biotechnological process for the treatment of effluents from activated sludge plants fed with NPnEO contaminated wastewater, the capability of Consortium A of biodegrading an industrial mixture of NPnEOs in the physiological condition of immobilized cells was investigated. Two identically configured packed bed reactors were developed by immobilizing the consortium on silica beads or granular activated carbon. Both reactors were tested in batch and continuous mode by feeding them with water supplemented with NPnEOs. The two reactors were monitored through chemical, microbiological and molecular integrated methodology. Active biofilms were generated on both immobilization supports. Both reactors displayed comparable NPnEO mineralization under batch and continuous conditions. FISH analyses evidenced that the biofilms evolved with time by changing the reactor operation mode and the organic load. Taken together, the data collected in this study provide a preliminary strong indication on the feasibility of Consortium A-based biofilm technology for the decontamination of NPnEO containing effluents.     

Mechanical and barrier properties of epoxy resin filled with multi-walled carbon nanotubes

Different multi-walled carbon nanotube (MWCNT) concentrations were incorporated in an epoxy resin and both the epoxy precursor and the composite were cured at 110 °C with a tertiary amine. Infrared spectroscopy was used to follow the curing progress by determining the decrease of the band due to the epoxy group. It was shown that the presence of MWCNTs accelerates the process, halving the time for the disappearance of the epoxy band. Atomic force microscopy demonstrated that the carbon nanotubes are well embedded in the epoxy matrix and singularly dispersed or in bundles, depending on their concentration. As a consequence of the good dispersion and interpenetration of the carbon nanotubes in the epoxy matrix, the glass transition temperature increased with increasing MWCNT concentration. Dynamic-mechanical analysis indicated a higher elastic modulus, particularly at high temperatures. The study of the transport properties, sorption and diffusion of water vapour at different activities, showed improved barrier properties on increasing the CNT concentration.     

Insights into the Mechanisms of Heat Priming and Thermotolerance in Tobacco Pollen

Global warming leads to a progressive rise in environmental temperature. Plants, as sessile organisms, are threatened by these changes; the male gametophyte is extremely sensitive to high temperature and its ability to preserve its physiological status under heat stress is known as acquired thermotolerance. This latter can be achieved by exposing plant to a sub-lethal temperature (priming) or to a progressive increase in temperature. The present research aims to investigate the effects of heat priming on the functioning of tobacco pollen grains. In addition to evaluating basic physiological parameters (e.g., pollen viability, germination and pollen tube length), several aspects related to a correct pollen functioning were considered. Calcium (Ca²⁺) level, reactive oxygen species (ROS) and related antioxidant systems were investigated, also to the organization of actin filaments and cytoskeletal protein such as tubulin (including tyrosinated and acetylated isoforms) and actin. We also focused on sucrose synthase (Sus), a key metabolic enzyme and on the content of main soluble sugars, including UDP-glucose. Results here obtained showed that a pre-exposure to sub-lethal temperatures can positively enhance pollen performance by altering its metabolism. This can have a considerable impact, especially from the point of view of breeding strategies aimed at improving crop species.     

Silver Nanoparticles Derived by Artemisia arborescens Reveal Anticancer and Apoptosis-Inducing Effects

The fight against cancer is one of the main challenges for medical research. Recently, nanotechnology has made significant progress, providing possibilities for developing innovative nanomaterials to overcome the common limitations of current therapies. In this context, silver nanoparticles (AgNPs) represent a promising nano-tool able to offer interesting applications for cancer research. Following this path, we combined the silver proprieties with Artemisia arborescens characteristics, producing novel nanoparticles called Artemisia–AgNPs. A “green” synthesis method was performed to produce Artemisia–AgNPs, using Artemisia arborescens extracts. This kind of photosynthesis is an eco-friendly, inexpensive, and fast approach. Moreover, the bioorganic molecules of plant extracts improved the biocompatibility and efficacy of Artemisia–AgNPs. The Artemisia–AgNPs were fully characterized and tested to compare their effects on various cancer cell lines, in particular HeLa and MCF-7. Artemisia–AgNPs treatment showed dose-dependent growth inhibition of cancer cells. Moreover, we evaluated their impact on the cell cycle, observing a G1 arrest mediated by Artemisia–AgNPs treatment. Using a clonogenic assay after treatment, we observed a complete lack of cell colonies, which demonstrated cell reproducibility death. To have a broader overview on gene expression impact, we performed RNA-sequencing, which demonstrated the potential of Artemisia–AgNPs as a suitable candidate tool in cancer research.