An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes

Constraint-based modeling is largely used in computational studies of metabolism. We propose here a novel approach that aims to identify ensembles of flux distributions that comply with one or more target phenotype(s). The methodology has been tested on a small-scale model of yeast energy metabolism. The target phenotypes describe the differential pattern of ethanol production and O₂ consumption observed in “Crabtree-positive” and “Crabtree-negative” yeasts in changing environment (i.e., when the upper limit of glucose uptake is varied). The ensembles were obtained either by selection among sampled flux distributions or by means of a search heuristic (genetic algorithm). The former approach provided indication about the probability to observe a given phenotype, but the resulting ensembles could not be unambiguously partitioned into “Crabtree-positive” and “Crabtree-negative” clusters. On the contrary well-separated clusters were obtained with the latter method. The cluster analysis further allowed identification of distinct groups within each target phenotype. The method may thus prove useful in characterizing the design principles underlying metabolic plasticity arising from evolving physio-pathological or developmental constraints.     

Biodesulfurization of dibenzothiophene sulfone by Arthrobacter sp. and studies with oxidized Illinois No. 6 coal

A bacterium identified as Arthrobacter sp. was grown on dibenzothiophene (DBT) sulfone as a sole source of sulfur, producing sulfite and sulfate. Sulfur in DBT sulfone (1.0 mM) was nearly quantitatively converted to sulfate by the organism. The organism could also use DBT sulfone as a sole source of carbon and energy. There was evidence for transient accumulation of benzoic acid in the culture medium after growth of the cells slowed. The DBT sulfoxide analogue 9-fluorenone was converted by resting cells to a product identified as 1,10-dihydroxy-1,10-dihydrofluoren-9-one, suggesting that DBT sulfone may be metabolized via an angular hydroxylation resulting in carbon- sulfur bond cleavage. This strain of Arthrobacter showed no ability to desulfurize oxidized Illinois No. 6 coal.     

Influence of thickness and processing history on fatigue fracture of nylon 66. Part II: Crack tip morphology

Fatigue crack propagation rates in injection molded nylon 66 were previously shown to be strongly affected by prior processing history. To provide a physical basis for the observed acceleration in crack growth rates, microtomed sections were cut through the tips of stable fatigue cracks and examined by optical microscopy. A reduction in spherulite size occurs with reprocessing along with an accompanying decrease in the amount of deformation at the crack tip. For the initially processed nylon 66 this deformation consists of a vast array of independently initiated craze-like zones. Patchy type regions observed on the fatigue fracture surface are similar in size to the initially formed crazed zones. Crack advance occurs by the breakdown and coalescence of the crazed regions via matrix shearing. The extensive damage zone is believed to result in a reduction in stress intensity at the crack tip thereby reducing the crack propagation rates. For the reprocessed nylon 66, one observes fewer crazes and a sharper fatigue crack tip with a consequent acceleration in crack propagation rates and a smoother fracture surface.     

An empirical investigation of Technology Readiness among medical staff based in Greek hospitals

Technology readiness (TR) represents an individual’s mental readiness to accept new technologies. Although the TR scale has been used in many studies, its application in the healthcare context is limited. This paper focuses on identifying the TR profiles of medical staff and to model preference TR variations with respect to computer use, computer knowledge and computer feature demands. The study reports results from a nationwide study conducted in Greece, during a three-year period, which sampled responses from 604 physicians and nurses working in 14 Greek hospitals. Exploratory Structural Equation Modelling analysis is used in order to confirm the structure of the Technology Readiness Index. The results confirm the five groups of the TR taxonomy. Statistical differences were found between classes in information and communication technology (ICT) knowledge, ICT feature demands, hours of use per week as well as ICT use performance, but not in the general use of ICT. The results facilitate comprehension of the factors, which influence the use of ICT by medical staff and, in addition, they convey important policy and managerial implications. In conclusion, medical staff should be treated according to its TR taxonomy classes in order to expedite the acceptance and use of an ICT system.     

The longitudinal impact of enterprise system users’ pre-adoption expectations and organizational support on post-adoption proficient usage

Although enterprise systems (ES) are ubiquitous, many firms report less than stellar payoffs from these costly investments, with underutilization often attributed to failures in the implementation process. Unfortunately, research has not provided sufficient insights into these failures, in part because it has focused on actual usage, as opposed to proficient usage, as the benchmark for successful implementation. Moreover, research has not generally examined how the adoption process unfolds over time, thus overlooking potential underlying mechanisms that may help explain how adopters achieve proficiency. To begin addressing these shortcomings, we study how adopters’ pre-adoption expectations, enacted over time, can influence their post-adoption proficiency, by shaping how and why they spend time using the system during the adoption period. We analyzed time-lagged survey data from 153 financial analysts, required to adopt new ES-based software, at a multinational bank. We found that adopters who hold pre-adoption expectations reflecting greater internal and external motives to adopt the system as well as systematically integrate it into their work routines are more apt to use the system in ways that enhance their cumulative knowledge of it, and subsequently develop higher levels of proficiency post-adoption. Moreover, greater organizational support enhanced the impact of adopters’ expectations on proficiency, except when their actual use is low in which case organizational support had an adverse effect.     

IT capability and organizational performance: the roles of business process agility and environmental factors

The business value of information technology (IT) has been one of the top concerns of both practitioners and scholars for decades. Numerous studies have documented the positive effects of IT capability on organizational performance but our knowledge of the processes through which such gains are achieved remains limited due to a lack of focus on the business environment. Such a linkage therefore remains the subject of debate in the information systems literature. In this study, we fill this gap by investigating the mediating role of business process agility and the moderating roles of environmental factors. On the basis of matched survey data obtained from 214 IT and business executives from manufacturing firms in China, our analyses show that even though firm-wide IT capability presents the characteristics of rarity, appropriability, non-reproducibility, and non-substitutability, its impact on organizational performance is fully mediated by business process agility. Our results also show that the impact of the environment is multifaceted and nuanced. In particular, environmental hostility weakens the effect of IT capability on business process agility, while environmental complexity strengthens it. The theoretical and practical implications of this study, and its limitations, are also discussed.     

Integrated clinical pathway management for medical quality improvement – based on a semiotically inspired systems architecture

Clinical pathway is an approach to standardise care processes to support the implementations of clinical guidelines and protocols. It is designed to support the management of treatment processes including clinical and non-clinical activities, resources and also financial aspects. It provides detailed guidance for each stage in the management of a patient with the aim of improving the continuity and coordination of care across different disciplines and sectors. However, in the practical treatment process, the lack of knowledge sharing and information accuracy of paper-based clinical pathways burden health-care staff with a large amount of paper work. This will often result in medical errors, inefficient treatment process and thus poor quality medical services. This paper first presents a theoretical underpinning and a co-design research methodology for integrated pathway management by drawing input from organisational semiotics. An approach to integrated clinical pathway management is then proposed, which aims to embed pathway knowledge into treatment processes and existing hospital information systems. The capability of this approach has been demonstrated through the case study in one of the largest hospitals in China. The outcome reveals that medical quality can be improved significantly by the classified clinical pathway knowledge and seamless integration with hospital information systems.     

Albumin stimulates lysophosphatidic acid acyltransferase activity in T-lymphocyte membranes

Phosphatidic acid (PtdOH) and lysophosphatidic acid (lysoPtdOH) have been shown to enhance T-lymphocyte function. However, the FA preference and influence of acyl-CoA binding proteins on lysoPtdOH and PtdOH biosynthesis are not known. Therefore, we determined glycerol-3-phosphate acyltransferase (GPAT) and lysophosphatidic acid acyltransferase (LAT) activity in rat T-lymphocyte and liver membrane preparations in the presence of palmitoyl-CoA and oleoyl-CoA with or without BSA. We found two different properties of GPAT and LAT in whole T-lymphocyte membrane preparations relative to liver. First, T-lymphocyte basal GPAT and LAT activities were similar, whereas in liver membranes LAT activity was 10-fold higher than GPAT. Second, T-lymphocyte LAT, but not GPAT, activity was inducible (fivefold) by the addition of albumin in the presence of palmitoyl-CoA but not oleoyl-CoA. In contrast, albumin stimulated GPAT, but not LAT, activity in liver membranes in the presence of palmitoyl-CoA. These results show, for the first time, that T-lymphocyte LAT activity can be increased by the presence of an acyl-CoA binding protein, which may indicate a new important control mechanism for regulating intracellular lysoPtdOH and PtdOH levels in T-lymphocytes.     

Surface properties of commercial polymer films following various gas plasma treatments

Surface properties of a number of commercial thermoplastic polymer films were investigated before and after brief exposures to RF induced, low temperature gas plasmas. Water wettability and adhesion of vapor deposited aluminum to thin films (8–12 micron) of polyethylene, polypropylene, polyester, polysulfone, polycarbonate, and polyvinylidene fluoride films were studied before and after treatments with oxygen, 96% CF₄/4% O₂, and helium plasmas. Treatment with oxygen plasmas showed the greatest change in water wettability for polyvinylidene fluoride and polypropylene films, while treatment with 96% CF₄/4% O₂ showed dramatic changes in wettability of polycarbonate, polysulfone, and polystyrene. Excellent adhesion of aluminium was found for polymers that had been previously exposed to gas plasmas.