A photoluminescence-based quantum semiconductor biosensor for rapid in situ detection of Escherichia coli

This work describes a novel method of detecting Escherichia coli using photoluminescence (PL) emission from III–V quantum semiconductor (QS) devices functionalized with two different antibody-based architectures. The first approach employed self-assembled monolayers of biotinylated polyethylene glycol thiols to immobilize biotinylated antibody via neutravidin. In the second approach, we used QS microstructures coated with a thin layer of Si₃N₄ allowing direct functionalization with E. coli antibodies through hydrofluoric acid etching and glutaraldehyde-based reticulation. Atomic force, optical and fluorescence microscopy measurements were used to assess the immobilization process. Depending on the biosensing architecture, density of the immobilized bacteria was observed in the range of 0.5–0.7 bacteria/100 μm². The detection of E. coli at 10⁴ CFU/ml was achieved within less than 120 min of the bacteria exposure. It is expected that an even better sensitivity threshold could be achieved following further optimization of the method.     

From embedded sensors to sensorial materials—The road to function scale integration

Ubiquitous computing is about to become part of our everyday lives by integrating hundreds of “invisible” to us computing devices in our environment, so that they can unobtrusively and constantly assist us. This will imply more and smaller “invisible” sensors, homogeneously distributed and at the same time densely packed in host materials, responding to various stimuli and immediately delivering information. In order to reach this aim, the embedded sensors should be integrated within the host material, heading towards sensorial materials. The first step is to omit all parts that are not needed for the sensorial task and to find new solutions for a gentle integration. This is what we call function scale integration. The paper discusses sensor embedding in the human hand as an example of integration in nature, new technological applications and main challenges associated with this approach.     

Gaussian kernel optimization: Complex problem and a simple solution

The Gaussian kernel function implicitly defines the feature space of an algorithm and plays an essential role in the application of kernel methods. The parameter of Gaussian kernel function is a scalar that has significant influences on final results. However, until now, it is still unclear how to choose an optimal kernel parameter. In this paper, we propose a novel data-driven method to optimize the Gaussian kernel parameter, which only depends on the original dataset distribution and yields a simple solution to this complex problem. The proposed method is task irrelevant and can be used in any Gaussian kernel-based approach, including supervised and unsupervised machine learning. Simulation experiments demonstrate the efficacy of the obtained results. A user-friendly online calculator is implemented at: www.csbio.sjtu.edu.cn/bioinf/kernel/ for public use.     

Neural network based controller for Cr–Fe batch reduction process

An automated pilot plant has been designed and commissioned to carry out online/real-time data acquisition and control for the Cr⁶⁺–Fe²⁺ reduction process. Simulated data from the Cr⁶⁺–Fe²⁺ model derived are validated with online data and laboratory analysis using ICP-AES analysis method. The distinctive trend or patterns exhibited in the ORP profiles for the non-equilibrium model derived have been utilized to train neural network-based controllers for the process. The implementation of this process control is to ensure sufficient Fe²⁺ solution is dosed into the wastewater sample in order to reduce all Cr⁶⁺–Cr³⁺. The neural network controller has been utilized to compare the capability of set-point tracking with a PID controller in this process. For this process neural network-based controller dosed in less Fe²⁺ solution compared to the PID controller which hence reduces wastage of chemicals. Industrial Cr⁶⁺ wastewater samples obtained from an electro-plating factory has also been tested on the pilot plant using the neural network-based controller to determine its effectiveness to control the reduction process for a real plant. The results indicate the proposed controller is capable of fully reducing the Cr⁶⁺–Cr³⁺ in the batch treatment process with minimal dosage of Fe²⁺.     

Plasmonic enhanced fluorescence spectroscopy using side-polished microstructured optical fiber

We report excitation of surface plasmon in a gold-coated side-polished D-shape microstructure optical fiber (MOF). As the leaky evanescent field from the fiber core becomes highly localized by the plasmon wave, its intensity also gets amplified significantly. Here we demonstrate an efficient use of this intensified field as excitation in fluorescence spectroscopy. The so-called plasmonic enhanced fluorescence emission from Rhodamine B has been investigated experimentally. First, plasmonic effect alone was found to provide an immediate fluorescence enhancement factor of two. Second, experimental results show a good agreement with theoretical modeling. Strong evanescent field generation and surface enhancement with simple metallic coating makes this fiber based device a good candidate for compact fluorescence spectroscopy.     

Selective determination of urea using urease immobilized on ZnO nanowires

Well-aligned zinc oxide (ZnO) nanowire arrays were fabricated on gold-coated plastic substrates using a low-temperature aqueous chemical growth (ACG) method. The ZnO nanowire arrays with 50–130 nm diameters and ∼1 μm in lengths were used in an enzyme-based urea sensor through immobilization of the enzyme urease that was found to be sensitive to urea concentrations from 0.1 mM to 100 mM. Two linear sensitivity regions were observed when the electrochemical responses (EMF) of the sensors were plotted vs. the logarithmic concentration range of urea from 0.1 mM to 100 mM. The proposed sensor showed a sensitivity of 52.8 mV/decade for 0.1–40 mM urea and a fast response time less than 4 s was achieved with good selectivity, reproducibility and negligible response to common interferents such as ascorbic acid and uric acid, glucose, K⁺ and Na⁺ ions.     

High sensitive and selective formaldehyde sensors based on nanoparticle-assembled ZnO micro-octahedrons synthesized by homogeneous precipitation method

Nanoparticle-assembled ZnO micro-octahedrons were synthesized by a facile homogeneous precipitation method. The ZnO micro-octahedrons are hexagonal wurtzite with high crystallinity. Abundant structure defects were confirmed on ZnO surface by photoluminescence. Gas sensors based on the ZnO micro-octahedrons exhibited high response, selectivity and stability to 1–1000 ppm formaldehyde at 400 °C. Especially, even 1 ppm formaldehyde could be detected with high response (S = 22.7). It is of interest to point out that formaldehyde could be easily distinguished from ethanol or acetaldehyde with a selectivity of about 3. The high formaldehyde response is mainly attributed to the synergistic effect of high contents of electron donor defects (Zn_i and V_O) and highly active oxygen species (O²⁻) on the ZnO surface.     

Ascorbic acid imprinted polymer-modified graphite electrode: A diagnostic sensor for hypovitaminosis C at ultra trace ascorbic acid level

A new kind of molecularly imprinted polymer-modified graphite electrode was fabricated by “grafting-to” approach, incorporating sol–gel technique, for the detection of acute deficiency in serum ascorbic acid level (SAAL), manifesting hypovitaminosis C. The modified electrode exhibited ascorbic acid (AA) oxidation at less positive potential (0.0 V) than the earlier reported methods, resulting in a limit of detection as low as 6.13 ng mL⁻¹ (RSD = 1.2%, S/N = 3). The diffusion coefficient (1.096 × 10⁻⁵ cm² s⁻¹), rate constant (7.308 s⁻¹), and Gibb's free energy change (−12.59 kJ mol⁻¹) due to analyte adsorption, were also calculated to explore the kinetics of AA oxidation. The proposed sensor was found to enhance sensitivity substantially so as to detect ultra trace level of AA in the presence of other biologically important compounds (dopamine, uric acid, etc.), without any cross interference and matrix complications from biological fluids and pharmaceutical samples.     

The effect of DNA probe distribution on the reliability of label-free biosensors

As the design of label-free DNA biosensors matures, and their sizes reduced to enhance their sensitivity, not much has been researched about the variations in the received signal with the positioning of the probes on the sensitive surface. We approach this issue computationally in this paper. By adopting the finite-element model on a three-dimensional biological field-effect transistor (BioFET) slice, and running Monte-Carlo simulations on the positions of the DNA molecules, we extract the expected variations in the signal. Then, we show that signal-to-noise (SNR) ratio can be low enough to hinder the functionality of the device, placing a limitation on how low the sensitivity of a sensor of a certain size can be.