Unperturbed dimension of poly(4-acetoxystyrene) measured in good and theta solvents

In order to obtain the additional data concerning the unperturbed dimension of poly-4-substituted styrene, light scattering measurements are performed on the twenty-two fractions with molecular weight of (0.91–352)·10⁴ of poly(4-acetoxystyrene) in dioxan at 25°C, from which the molecular weight obtained was found easily to be evaluated with the gel permeation chromatography using THF. Phase separation experiments for this polymer indicate that the theta state is attained in isopropyl acetate at 19.7°C and butyl acetate at 26.8°C. By making viscosity measurements at that state, the value of K_Θ is directly evaluated as 5.4·10^?4 dl g^?1. The limiting viscosity number is also obtained in good solvents, THF and dioxan, at 25°C and constants of the Mark-Houwink-Sakurada equation in each solvent are determined. Further, approximately the same K_Θ as above is obtained from these data with the Stockmayer-Fixman plot. The calculated value of steric factor, 2.37, on this polymer may be plausible, compared with those of polyvinylaromatic derivatives.     

The nuclear actin-related protein Act3p/Arp4p is involved in the dynamics of chromatin-modulating complexes

Chromatin remodelling and histone-modifying complexes govern the modulation of chromatin structure. While components of these complexes are diverse, nuclear actin-related proteins (Arps) have been repeatedly found in these complexes from yeast to mammals. In most cases, Arps are required for functioning of the complexes, but the molecular mechanisms of nuclear Arps have as yet been largely unknown. The Arps and actin, sharing a common ancestor, are supposed to be highly similar in the three-dimensional structure of their core regions, including the ATP-binding pocket. The Arp Act3p/Arp4p of Saccharomyces cerevisiae exists within the nucleus, partly as a component of several high molecular mass complexes, including the NuA4 histone acetyltransferase (HAT) complex, and partly as uncomplexed molecules. We observed that mutations in the putative ATP-binding pocket of Act3p/Arp4p increased its concentration in the high molecular mass complexes and, conversely, that an excess of ATP or ATPgammaS led to the release of wild-type Act3p/Arp4p from the complexes. These results suggest a requirement of ATP binding by Act3p/Arp4p for its dissociation from the complexes. In accordance, a mutation in the putative ATP binding site of Act3p/Arp4p inhibited the conversion of the NuA4 complex into the smaller piccoloNuA4, which does not contain Act3p/Arp4p and exhibits HAT activity distinct from that of NuA4. Although the in vitro binding activity of ATP by recombinant Act3p/Arp4p was found to be rather weak, our observations, taken together, suggest that the ATP-binding pocket of Act3p/Arp4p is involved in the function of chromatin modulating complexes by regulating their dynamics.     

Identification of HLA-A24-restricted epitopes with high affinities to Hsp70 using peptide arrays

Heat shock protein 70 (Hsp70) family members are known as facilitators of immune responses by interacting with receptors on antigen-presenting cells leading to Hsp70-peptide uptake and antigen cross priming. Here, identification of human leukocyte antigen (HLA)-A24-restricted epitopes was achieved using peptide arrays for evaluation of their affinities to Hsp70 and HLA-A24 binding prediction tools. Using Hsp70 as the model antigen, the GYPVTNAVI and VFQHGKVEI peptides were identified as antigens. These peptides actually bound to HLA-A24 in the stabilization assay using T2-A*2402 cells, and induced a strong peptide-reactive cytotoxic T lymphocyte response in HLA-A24 transgenic mice after vaccination.     

Polymers degradable under environmental conditions through end-modification of poly(α-methylstyrene) derivatives

To induce degradabilities in polymers in response to environmental conditions, the end-modification reactions of poly(α-methylstyrene) derivatives were carried out. When diphenylphosphine chloride was used as a modifier for the living end of para-substituted PMS, the coupling efficiency was ca. 50%. 2-Phenylallyl halide derivatives such as 2-phenylallyl bromide, 2-(4-tolyl)allyl bromide, and α-trifluoromethylstyrene were found to be suitable end-modification agents. For example, ω-2-phenylallyl PMS was prepared with almost quantitative functionality by the reaction of the living PMS with 2-phenylallyl bromide. In a similar way, ω-3,3-difluoro-2-phenylallyl and ω-2-(4-tolyl)allyl PMS derivatives were synthesized. Based on thermogravimetric analysis, onset of the degradation temperature of the end-modified PMS derivatives decreased in the following order: ω-hydrogen- > ω-3,3-difluoro-2-phenylallyl- > ω-2-phenylallyl- > ω-2-(4-tolyl)allyl-PMS. Actually, the onset temperature of ω-2-(4-tolyl)allyl-PMS derivatives was 50°C lower than that of ω-H-PMS derivatives. These results indicate that the active species is produced effectively at the end unsaturated bond, which initiates the depolymerization of the polymer at rather low temperatures. Ionic degradation of these polymers was also investigated using butyllithium as an anionic initiator and methanesulfonic acid as a cationic initiator. Tendencies similar to the thermal degradation were observed. Therefore, it is concluded that a 2-phenylallyl substituent at the end of the PMS chain induces effective degradation through several mechanisms such as radical, anionic and cationic depolymerization reactions.     

State-space forms for higher-order discrete-time models

This paper presents a fundamental study of the connection between continuous- and discrete-time systems. Provided is a definition for discrete-time models, that is discrete-time systems with a continuous-time counterpart, whose order can be higher than that of the continuous-time system. This definition is based on a comparison in a certain sense on the time responses of continuous- and discrete-time systems. A theorem is presented for relating the higher-order discrete-time models to their continuous-time counterparts, which is an extension of a previous theorem for models with order equal to that of the continuous-time system. State-space forms are derived for models obtained through the use of a certain class of hold elements and through the use of mapping models, and these discrete-time systems are shown to be valid according to the definition. Special cases are models obtained using first-order and slewer hold devices, whose convergence to a continuous-time counterpart has not been shown mathematically before, and mapping models corresponding to two-step linear multi-step methods, which have not previously presented in the state-space form. The derived state-space forms provide a convenient way to implement these models for purposes of analysis, design, and implementation of discrete-time systems and finds applications in such areas as digital signal processing, digital simulation, and digital control.     

The effects of amino-acid mutations on specific interactions between urokinase-type plasminogen activator and its receptor: Ab initio molecular orbital calculations

During cancer invasion, the binding of urokinase-type plasminogen activator (uPA) to its receptor (uPAR) on the surface of a cancer cell is considered a trigger for invasion. Here, we present a stable structure of the solvated complex formed between uPA and uPAR (uPA-uPAR) and investigate the specific interactions between uPA and uPAR by ab initio fragment molecular orbital (FMO) calculations. The result indicates that the electrostatic interactions between the charged amino acid residues existing in both uPA and uPAR make a large contribution to the binding between uPA and uPAR. In particular, Lys23, Lys46, Lys98 and Lys61 of uPA are found to have strong attractive interactions with uPAR. To elucidate the effect of these residues on the interactions between uPA and uPAR, we substituted each of them with the uncharged amino acid Leu and investigated the interactions between the mutated uPA and wild-type uPAR. The interaction energies indicate that Lys46 and Lys98, which bind uPA to the rim of the central ligand-binding cavity of uPAR, make greater contributions to the binding between uPA and uPAR than Lys23, which is positioned at the bottom of the ligand-binding cavity of uPAR. The effect of hydrating water molecules located between uPA and uPAR is also investigated to be significant for the specific interactions between uPA and uPAR. These results are expected to be informative for developing new peptide antagonists that block the binding of uPA to uPAR.     

Performance evaluation system for probabilistic neural network hardware

The probabilistic neural network (PNN) is one of the most promising neural networks, and is now applied to some real-world applications. In order to speed up the PNN calculation considerably, we have developed a PNN hardware system for video image recognition. The performance of the PNN hardware cannot be evaluated precisely until the evaluation system is completed. In this study, we developed a performance evaluation system for the PNN hardware and demonstrated it using the developed evaluation system.This work was presented, in part, at the 8th International Symposium on Artificial Life and Robotics, Oita, Japan, January 24–26, 2003