Nebelung: Execution Environment for Transactional OpenMP

Future generations of Chip Multiprocessors (CMP) will provide dozens or even hundreds of cores inside the chip. Writing applications that benefit from the massive computational power offered by these chips is not going to be an easy task for mainstream programmers who are used to sequential algorithms rather than parallel ones. This paper explores the possibility of using Transactional Memory (TM) in OpenMP, the industrial standard for writing parallel programs on shared-memory architectures, for C, C++ and Fortran. One of the major complexities in writing OpenMP applications is the use of critical regions (locks), atomic regions and barriers to synchronize the execution of parallel activities in threads. TM has been proposed as a mechanism that abstracts some of the complexities associated with concurrent access to shared data while enabling scalable performance. The paper presents a first proof-of-concept implementation of OpenMP with TM. Some language extensions to OpenMP are proposed to express transactions. These extensions are implemented in our source-to-source OpenMP Mercurium compiler and our Software Transactional Memory (STM) runtime system Nebelung that supports the code generated by Mercurium. Hardware Transactional Memory (HTM) or Hardware-assisted STM (HaSTM) are seen as possible paths to make the tandem TM-OpenMP more scalable. In the evaluation section we show the preliminary results. The paper finishes with a set of open issues that still need to be addressed, either in OpenMP or in the hardware/software implementations of TM.     

Multilayered optical OFDM for high spectral efficiency in visible light communication system

Photonic Network Communications - This paper presents two new schemes for improving the spectral efficiency of an optical orthogonal frequency-division multiplexing-based visible light...     

Swelling–deswelling kinetics of poly(N‐isopropylacrylamide) hydrogels formed in PEG solutions

A series of poly(N‐isopropylacrylamide) (PNIPA) hydrogels was prepared by free‐radical crosslinking copolymerization of N‐isopropylacrylamide (NIPA) and N,N′‐methylenebisacrylamide (BAAm) in aqueous solutions of poly(ethylene glycol) of molecular weight 300 g/mol (PEG). The amount of PEG in the polymerization solvent, the crosslinker (BAAm) content, and the gel preparation temperature (T_prep) were varied in the gelation experiments. The hydrogels were characterized by the equilibrium swelling and elasticity tests as well as by the measurements of the deswelling–reswelling kinetics of the hydrogels in response to a temperature change between 25 and 48°C. The rate of deswelling of the swollen gel increases while the rate of reswelling of the collapsed gel decreases as the amount of PEG in the polymerization solvent is increased or as the crosslinker content is decreased. The T_prep effect on the swelling kinetics of the hydrogels was only observed if the PEG content of the polymerization solvent is less than 20%, which is explained with the screening of H‐bonding interactions in concentrated PEG solution. © 2005 Wiley Periodicals, Inc. J Appl Polym Sci 99: 37–44, 2006     

Ethidium bromide binding to DNA cryogels

The interaction of the classical intercalator ethidium bromide (EtBr) with the double helical network strands of DNA cryogels was investigated. The cryogels were prepared starting from aqueous solutions of DNA (about 2000 base pairs long) at ?18 °C using 1,4-butanediol diglycidyl ether crosslinker under various reaction conditions. In contrast to the solubilization of DNA hydrogels in aqueous EtBr solutions, DNA cryogels remain stable even after complete saturation of their EtBr binding sites. The total binding capacity of the cryogels is 0.6 ± 0.1 EtBr per nucleotide, which is close to the theoretical maximum number of EtBr molecules that can bind to DNA. Even in very dilute solutions (down to 3 μM), cryogels remove EtBr from aqueous solutions with an efficiency of 90%. The equilibrium binding constant and the maximum number of EtBr binding sites of the cryogels almost coincide with the reported values for the secondary binding process of EtBr by DNA in aqueous solutions. At low mole ratios of bound EtBr to DNA, the cryogels swell with increasing amount of bound EtBr, most likely caused by the lengthening of DNA due to the intercalated EtBr. The response of DNA cryogels to changes in EtBr concentration between 3 and 300 μM also suggests that they can be used to detect DNA binding substrates in aqueous solutions.     

Volatile fatty acid impacts on nitrite oxidation and carbon dioxide fixation in activated sludge

Batch test were performed to assess nitrite removal, nitrate formation, CO2 fixation, gaseous nitrogen production and microbial density in activated sludge exposed to volatile fatty acid (VFA) mixtures. Nitrite removal and nitrate formation were both affected by the presence of VFAs, but to different degrees. Nitrate formation rates were reduced to a greater extent (79%) than nitrite removal rates (36%) resulting in an apparent unbalanced nitrite oxidation reaction. Since the total bacterial density and the nitrite oxidizing bacteria (NOB, Nitrospira) concentration remained essentially constant under all test conditions, the reduction in rates was not due to heterotrophic uptake of nitrogen or to a decrease in the NOB population. In contrast to the nitrogen results, VFAs were not found to impact CO2 fixation efficiency. It appeared that nitrite oxidation occurred when VFAs were present since the oxidation of nitrite provides energy for CO2 fixation. However, nitrate produced from the oxidation of nitrite was reduced to gaseous nitrogen products. N2O gas was detected in the presence of VFAs which was a clear indication that VFAs stimulated an alternative pathway, such as aerobic denitrification, during biotransformation of nitrogen in activated sludge.     

Polymerization of pyrrole derivatives on polyacrylonitrile matrix,FTIR–ATR and dielectric spectroscopic characterization of composite thin films

Oxidative polymerization of acrylonitrile (AN) initiated by Ce(IV)–oxalic acid redox system in the aqueous medium was performed and polyacrylonitrile (PAN)/polypyrrole (PPy) composite thin films were prepared by polymerization of pyrrole on polyacrylonitrile matrix. Effect of concentration of pyrrole derivatives on the resulting polymeric film properties was investigated. The influence of the pyrrole derivative type and content on the dielectric permittivity, dielectric loss and electrical properties of the composite films were analyzed in the frequency range from 0.05 Hz to 10 MHz. For a selected concentration of 200 μl of composite films at 10⁷ Hz, the conductivity was found to be in the following order: PAN–PPy < PAN–PNMPy < PAN–PNPhPy. Dielectric constant increase of the composite films was more obvious when the quantity of n-phenyl pyrrole was increased. A linear relationship was observed between the absorbances (FTIR–ATR) and conductivities (dielectric spectroscopy).     

Development and Cyclic Behavior of U-Shaped Steel Dampers with Perforated and Nonparallel Arm Configurations

Metallic dampers are sacrificial devices (fuses) that dissipate significant energy during earthquakes while protecting other parts of structures from possible damage. In addition to numerous implementation opportunities of other base isolation systems, U-shaped dampers (UD) are one of the widely investigated and used devices in practice especially in Japan. The present study focuses on enhancing seismic performance of these types of dampers by changing their geometric properties. UDs with perforated (i.e. with holes) and/or nonparallel arms are developed for this purpose. For a better comparison, the criterion of equal material volume (or mass) has been utilized. Three dimensional finite element models of the new type of UDs are formed and investigated numerically under selected displacement histories. Based on the obtained hysteretic curves; dissipated energy intensities, effective stiffness ratios, reaction forces, effective damping ratios are evaluated in this parametric study. It is found that both damper types have merits in use of seismic applications and that the selection of the damper configuration is dependent on the design specific issues.     

Modeling Interfirm Dependency: Game Theoretic Simulation to Examine the Holdup Problem in Project Networks

Subcontractor selection strategies used by contractors can significantly affect short-term project and long-term organizational success. Existing research on subcontractor selection strategy implicitly assumes that the evaluation of subcontractors depends on current conditions. We extend this perspective by integrating an agent-based simulation model with game theory to examine whether precontract partner selection strategies that do not consider subcontractor selection as a repeated game may lead to a version of the holdup problem. The holdup problem we investigate focuses on relationship-specific investments in learning after the introduction of an innovation or organizational change across a project network. A minimum total cost strategy may decelerate the rate of adaptation to an innovation or organizational change, thereby proving that the holdup problem can exist in project networks. The findings contribute to subcontractor selection strategy literature by simulating the impact of the holdup problem in project networks, distinguishing task interdependence as a moderating variable, and identifying that the minimum total cost strategy can be a suboptimal strategy for project networks adapting to systemic changes.     

Signal-processing techniques to reduce the sinusoidal steady-stateerror in the FDTD method

Techniques to improve the accuracy of the finite-difference time-domain (FDTD) solutions employing sinusoidal excitations are developed. The FDTD computational domain is considered as a sampled system and analyzed with respect to the aliasing error using the Nyquist sampling theorem. After a careful examination of how the high-frequency components in the excitation cause sinusoidal steady-state errors in the FDTD solutions, the use of smoothing windows and digital low-pass filters is suggested to reduce the error. The reduction in the error is demonstrated for various cases