Generalized overlap measures for evaluation and validation in medical image analysis

Measures of overlap of labelled regions of images, such as the Dice and Tanimoto coefficients, have been extensively used to evaluate image registration and segmentation algorithms. Modern studies can include multiple labels defined on multiple images yet most evaluation schemes report one overlap per labelled region, simply averaged over multiple images. In this paper, common overlap measures are generalized to measure the total overlap of ensembles of labels defined on multiple test images and account for fractional labels using fuzzy set theory. This framework allows a single "figure-of-merit" to be reported which summarises the results of a complex experiment by image pair, by label or overall. A complementary measure of error, the overlap distance, is defined which captures the spatial extent of the nonoverlapping part and is related to the Hausdorff distance computed on grey level images. The generalized overlap measures are validated on synthetic images for which the overlap can be computed analytically and used as similarity measures in nonrigid registration of three-dimensional magnetic resonance imaging (MRI) brain images. Finally, a pragmatic segmentation ground truth is constructed by registering a magnetic resonance atlas brain to 20 individual scans, and used with the overlap measures to evaluate publicly available brain segmentation algorithms.     

Link-Node Characterization for Energy-Efficient Communication in a Static Random Wireless Sensor Network

Studies of wireless networks often work with a relatively high communication range so that each node typically communicates with a high number of neighbors. This is necessary, with a random placement, to avoid loss of coverage or connectivity. However, communicating through remote neighbors requires more energy, which can be a severe disadvantage since energy is often critical in this type of network. By comparing two-ranges, one to ensure coverage and one to save energy, we identify link-nodes which play an essential role to keep the network connected. Characterizing these nodes and their occurrence in communication routes will help to save energy and increase lifetime of the overall network. Without precautions, these link-nodes receive a high traffic load. Using simulations we find that slightly longer routes can avoid link-nodes and thus reduce average energy consumption. Network lifetime can be extended by identifying these nodes at startup and reducing their energy consumption wherever possible.     

Downstream environmental effects of dam operations: Changes in habitat quality for native fish species

Hydropeaking dam operation and water extractions for irrigation have been broadly stated as alterations to natural flow regimes, which have also been noticed in the Biobío Watershed, in Central Chile, since 1996. In the Biobío River, most of native fish species are endemic and very little is known about them. Their ecological and social values have never been estimated, and there is lack of information about their habitat preferences. Furthermore, changes on fish habitat availability due to natural and/or man‐made causes have not been evaluated. In this study, eight native fish species, in a representative reach of the Biobío River, were studied and their preferred habitats were surveyed and characterized. A hydrodynamic model was built and linked to the fish habitat simulation model CASiMiR. Fuzzy rules and fuzzy sets were developed for describing habitat preference of the native fish species. CASiMiR was then used to simulate how physical habitat conditions vary due to flow control (i.e. upstream dams). Results show how overall habitat quality, expressed as weighted usable area (WUA) and hydraulic habitat suitability (HHS), changes and fluctuates due to the dam operation and how the daily hydropeaking is influencing quantity, quality and location of different habitats. The study suggests that the analysed fish are highly susceptible to flow control, as dams are currently operated, and fish habitat improvement suggestions are proposed. Copyright © 2010 John Wiley & Sons, Ltd.     

Stigma and barriers to care in soldiers postcombat.

The present study examined the effects of leadership and unit cohesion on mental health stigma and perceived barriers to care. A sample of 680 soldiers from combat support units were surveyed 3 months after their return from combat operations in Iraq. The survey included scales on psychological symptoms and perceptions of leader behaviors and unit cohesion, as well as items assessing stigma and barriers to care. The sample was used to test the independent and interactive effects of leadership and unit cohesion on soldiers’ perceptions of stigma and barriers to care. Analyses yielded significant interaction effects between leadership and cohesion in predicting stigma and barriers to care, while controlling for the effects of mental health symptoms. Soldiers who rated their leaders more highly and who reported higher unit cohesion also reported lower scores on both stigma and perceived barriers to care. Thus, positive leadership and unit cohesion can reduce perceptions of stigma and barriers to care, even after accounting for the relationship between mental health symptoms and these outcomes. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

A new contribution to the study of the electrosynthesis of magnetic nanoparticles: the influence of the supporting electrolyte

This paper shows how magnetic nanoparticles are produced by electrochemical synthesis using a low carbon steel bar as an anode and 100 mA cm^?2 electric perturbations at room temperature. Two different kinds of salts, (CH₃)₄NCl and NaCl, were used to prepare the supporting electrolyte solutions. This allowed a comparison to be made between a surfactant and common salt, and allowed their influence on particle size to be analyzed. Additionally, mixtures of water and ethanol were added to the electrolyte solution in order to improve particle size distribution. The nanoparticle samples were characterized by X-ray diffraction, TEM, magnetization measurements, and Raman and Mössbauer spectroscopy. The results showed that after an optimized time of 10 min, the nanoparticles obtained in all the evaluated electrolytes were mainly magnetite (Fe₃O₄). The particles were between 8 and 10 nm in size. Depending on the nature of the electrolyte, the magnetite nanoparticles exhibited high purity and stoichiometry. The presence of ethanol in the electrolyte avoided particle agglomeration during the formation of magnetite. When the magnetic nanoparticles were exposed to an external magnetic field they showed superparamagnetic behavior and negligible coercivity. Such qualities are extremely useful for applications like ferrofluid precursors.     

Current advances in the non‐chromatographic fractionation and characterization of PEGylated proteins

For more than 30 years, PEGylation has been used to improve the physicochemical properties of several proteins and therapeutic drugs having a major impact in the biopharmaceutical industry. The purification of PEGylated proteins usually involves two basic challenges: (1) the separation of PEG‐proteins from other reaction products; and (2) the sub‐fractionation of PEG‐proteins on the basis of their degree of PEGylation and positional isomerism. Currently, most PEGylated protein purification processes are based on chromatographic techniques, especially size exclusion chromatography (SEC) and ion exchange chromatography (IEX). Nonetheless, other less frequently used strategies based on non‐chromatographic techniques such as ultrafiltration, electrophoresis, capillary electrophoresis, and aqueous two‐phase systems have been developed in order to fractionate and analyze PEGylated derivates. This review presents current advances in some of the most widely used non‐chromatographic strategies for the fractionation and analysis of PEG‐protein conjugates. Copyright © 2010 Society of Chemical Industry     

Prediction of fracture in a dual-phase steel subjected to non-linear straining

In this work, selected fracture criteria are applied to predict the fracture of dual-phase steel subjected to non-linear strain paths. Furthermore, the effects of manufacturing history are studied. Four fracture criteria were calibrated in three tests using standard specimens. The fracture criteria were first validated in the circular Nakajima test. A second validation test case was included in order to validate fracture prediction for non-linear strain paths. In this test a sheet metal component was manufactured and subsequently stretched until it fractured. All fracture criteria included in this study predict fracture during the Nakajima test with reasonable accuracy. In the second validation test however, the different fracture criteria show considerable diversity in accumulated damage during manufacturing which caused substantial scatter of the fracture prediction in the subsequent stretching. This shows that manufacturing history influences the prediction of fracture.     

Flexible joints control: A minimum-time feed-forward technique

The paper proposes a linear programming approach to the feed-forward minimum-time control of flexible joints. Taking into account both input and output constraints, the optimal bang–bang control is computed by discretizing a continuous-time joint model and by solving a sequence of linear programming feasibility problems. The resulting joint motion is a smooth rest-to-rest motion without oscillations. Theoretical analysis is presented and proof of convergence is given. Experimental results illustrate the proposed open-loop technique. Comparisons are made with inversion-based techniques.     

Synthesis of ω‐amino‐α‐phenylcarbonate alkanes and their polymerization to [n]‐polyurethanes

Aliphatic [n]‐polyurethanes have recently been synthesized from ω‐isocyanato‐α‐alkanols or, more traditionally, by cationic ring‐opening polymerization of cyclourethanes or by the Bu₂Sn(OMe)₂‐promoted polycondensation of ω‐hydroxy‐α‐O‐phenylurethane alkanes. For the latter procedures, the conditions employed do not seem to be suitable for highly functionalized monomers. In contrast, the polymerization of ω‐amino‐α‐phenylcarbonate alkanes is expected to occur under milder conditions. ω‐Amino‐α‐phenylcarbonate alkanes have been synthesized from 6‐aminohexanol (1) and 3‐aminopropanol (6). The procedure involves the N‐Boc protection of the amino group, followed by activation of the alcohol. Removal of the N‐Boc affords the corresponding ω‐amino‐1‐O‐phenyloxycarbonyloxyalkane hydrochlorides. Other oligomeric comonomers between 1 and 6 have been prepared. The polymerization of these precursors takes place in the absence of metal catalysts to afford the corresponding linear and regioregular [n]‐polyurethanes. The procedure described is useful for the preparation of stable ω‐amino‐α‐phenylcarbonate alkane derivatives, which possess varied chain lengths between the terminal functions. These monomers yield [n]‐polyurethanes having various structures starting from just two aminoalkanols. The polyurethanes were obtained in high yields, with reasonable molecular weight and polydispersity values, and they were characterized spectroscopically and thermally. These studies reveal constitutionally uniform structures that are free of carbonate or urea linkages. Copyright © 2010 Society of Chemical Industry