Dynamic Spar Elements and Discrete Element Methods in Two Dimensions for the Modeling of Soil-Inclusion Problems

Discrete element methods (DEMs) provide new numerical means to study the behavior of soil-inclusion systems. In some cases, however, the classic DEM fails to model specific aspects of the inclusions. That is why a model based on spar elements is introduced, designed specifically for inclusions. In this model, the movement of the inclusion is considered as a dynamic process and is computed step by step in the same way as in the DEM. The model can be coupled with a DEM code, thus enabling one to simulate the interaction between an inclusion and a disk assembly. Contact laws at the contacts between disks and spar elements describe the interface constitutive behavior. Finally, the results obtained by simulating a geosynthetic anchorage in two different ways are reported. In the first case the inclusion is represented by disks, while in the last case it is represented by spar elements. The comparison shows that spar elements are much more versatile and can simplify the calibration of the discrete models used to simulate soil-inclusion systems.     

A New Method for Measurement of Helium Mass Flow Rate in the Cryogenic System of TORE SUPRA

The TORE SUPRA Tokamak was built by EURATOM-CEA association. The NbTi conductor of superconducting coils is inserted in a tight enclosure filled with pressurized superfluid helium of 0.125 MPa at 1.8 K. The thick casing is cooled to 4.5 K by 1.8 MPa in 4.5 K supercritical helium circulation. Around this thick casing, a 80 K thermal shield protects the parts at very low temperatures from the thermal radiation, which is cooled by pressurized helium at 80 K and 1.8 MPa. A new measurement method for helium mass flow rate of 80 K shield and 4.5 K casing is described in this paper. The commissioning was done on the two helium loops of the cryoplant: the supercritical 4.5 K thick casing and 80 K shields. The purpose is to improve control of the 4.5 K and 80 K refrigeration loops.     

Cantilever-based microsystem for contact and non-contact deposition of picoliter biological samples

This paper describes a cantilever-based microsystem that permits the deposition of picoliter biological samples using a contact or non-contact method. Arrays of silicon-based cantilevers have been used to produce DNA microarrays. An electrowetting-on-dielectric (EWOD) principle is applied for the loading of the liquid by controlling surface tension. Deposition is achieved by direct contact between cantilevers and the surface by capillary transport. A non-contact deposition method has also been developed. It consists in an electric-field applied between the cantilevers and a conductive surface. The results obtained demonstrate that our system meets the need for producing high-density DNA, protein and cell chips.     

Using ambients to control resources

Current software and hardware systems, being parallel and reconfigurable, raise new safety and reliability problems, and the resolution of these problems requires new methods. Numerous proposals aim at reducing the threat of bugs and preventing several kinds of attacks. In this paper, we develop an extension of the calculus of mobile ambients, named controlled ambients, that is suited for expressing such issues, specifically denial of service attacks. We present a type system for controlled ambients, which makes static resource control possible in our setting, and enhance it with a rich notion of resources .     

Isotropic Energies, Filters and Splines for Vector Field Regularization

The aim of this paper is to propose new regularization and filtering techniques for dense and sparse vector fields, and to focus on their application to non-rigid registration. Indeed, most of the regularization energies used in non-rigid registration operate independently on each coordinate of the transformation. The only common exception is the linear elastic energy, which enables cross-effects between coordinates. Cross-effects are yet essential to give realistic deformations in the uniform parts of the image, where displacements are interpolated.In this paper, we propose to find isotropic quadratic differential forms operating on a vector field, using a known theorem on isotropic tensors, and we give results for differentials of order 1 and 2. The quadratic approximation induced by these energies yields a new class of vectorial filters, applied numerically in the Fourier domain. We also propose a class of separable isotropic filters generalizing Gaussian filtering to vector fields, which enables fast smoothing in the spatial domain. Then we deduce splines in the context of interpolation or approximation of sparse displacements. These splines generalize scalar Laplacian splines, such as thin-plate splines, to vector interpolation. Finally, we propose to solve the problem of approximating a dense and a sparse displacement field at the same time. This last formulation enables us to introduce sparse geometrical constraints in intensity based non-rigid registration algorithms, illustrated here on intersubject brain registration.     

Generation and adaptation of computational surface meshes from discrete anatomical data

Fast and accurate scanning devices are nowadays widely used in many engineering and biomedical fields. The resulting discrete data is usually directly converted into polygonal surface meshes, using ‘brute‐force’ algorithms, often resulting in meshes that may contain several millions of polygons. Simplification is therefore required in order to make storage, computation and display possible if not efficient. In this paper, we present a general scheme for mesh simplification and optimization that allows to control the geometric approximation as well as the element shape and size quality (required for numerical simulations). Several examples ranging from academic to complex biomedical geometries (organs) are presented to illustrate the efficiency and the utility of the proposed approach. Copyright © 2004 John Wiley & Sons, Ltd.     

Mining conjunctive sequential patterns

In this paper we aim at extending the non-derivable condensed representation in frequent itemset mining to sequential pattern mining. We start by showing a negative example: in the context of frequent sequences, the notion of non-derivability is meaningless. Therefore, we extend our focus to the mining of conjunctions of sequences. Besides of being of practical importance, this class of patterns has some nice theoretical properties. Based on a new unexploited theoretical definition of equivalence classes for sequential patterns, we are able to extend the notion of a non-derivable itemset to the sequence domain. We present a new depth-first approach to mine non-derivable conjunctive sequential patterns and show its use in mining association rules for sequences. This approach is based on a well known combinatorial theorem: the Möbius inversion. A performance study using both synthetic and real datasets illustrates the efficiency of our mining algorithm. These new introduced patterns have a high-potential for real-life applications, especially for network monitoring and biomedical fields with the ability to get sequential association rules with all the classical statistical metrics such as confidence, conviction, lift etc.     

Localized Ligand Induced Electroless Plating (LIEP) Process for the Fabrication of Copper Patterns Onto Flexible Polymer Substrates

The “ligand induced electroless plating (LIEP) process” is a simple process to obtain localized metal plating onto flexible polymers such as poly(ethylene terephtalate) and polyvinylidene fluoride sheets. This generic and cost‐effective process, efficient on any common polymer surface, is based on the covalent grafting by the GraftFast process of a thin chelating polymer film, such as poly(acrylic acid), which can complex copper ions. The entrapped copper ions are then chemically reduced in situ and the resulting Cu⁰ species act as a seed layer for the electroless copper growth which, thus, starts inside the host polymer. The present work focuses on the application of the LIEP process to the patterning of localized metallic tracks via two simple lithographic methods. The first is based on a standard photolithography process using a positive photoresist masking to prevent the covalent grafting of PAA in designated areas of the polymer substrate. In the second, the patterning is performed by direct printing of the mask with a commercial laser printer. In both cases, the mask was lifted off before the copper electroless plating step, which provides ecological benefits, since only the amount of copper necessary for the metallic patterning is used.     

Mitochondrial Dysfunction in Spinocerebellar Ataxia Type 3 Is Linked to VDAC1 Deubiquitination

Dysfunctional mitochondria are linked to several neurodegenerative diseases. Metabolic defects, a symptom which can result from dysfunctional mitochondria, are also present in spinocerebellar ataxia type 3 (SCA3), also known as Machado–Joseph disease, the most frequent, dominantly inherited neurodegenerative ataxia worldwide. Mitochondrial dysfunction has been reported for several neurodegenerative disorders and ataxin-3 is known to deubiquitinylate parkin, a key protein required for canonical mitophagy. In this study, we analyzed mitochondrial function and mitophagy in a patient-derived SCA3 cell model. Human fibroblast lines isolated from SCA3 patients were immortalized and characterized. SCA3 patient fibroblasts revealed circular, ring-shaped mitochondria and featured reduced OXPHOS complexes, ATP production and cell viability. We show that wildtype ataxin-3 deubiquitinates VDAC1 (voltage-dependent anion channel 1), a member of the mitochondrial permeability transition pore and a parkin substrate. In SCA3 patients, VDAC1 deubiquitination and parkin recruitment to the depolarized mitochondria is inhibited. Increased p62-linked mitophagy, autophagosome formation and autophagy is observed under disease conditions, which is in line with mitochondrial fission. SCA3 fibroblast lines demonstrated a mitochondrial phenotype and dysregulation of parkin-VDAC1-mediated mitophagy, thereby promoting mitochondrial quality control via alternative pathways.