Short communication: Optimal random regression models for milk production in dairy cattle

Legendre polynomials of orders 3 to 8 in random regression models (RRM) for first-lactation milk production in Canadian Holsteins were compared statistically to determine the best model. Twenty-six RRM were compared using LP of order 5 for the phenotypic age-season groupings. Variance components of RRM were estimated using Bayesian estimation via Gibbs sampling. Several statistical criteria for model comparison were used including the total residual variance, the log likelihood function, Akaike's information criterion, the Bayesian information criterion, Bayes factors, an information-theoretic measure of model complexity, and the percentage relative reduction in complexity. The residual variance always picks the model with the most parameters. The log likelihood and information-theoretic measure picked the model with order 5 for additive genetic effects and order 7 for permanent environmental effects. The currently used model in Canada (order 5 for both additive and permanent environmental effects) was not the best for any single criterion, but was optimal when considering all criteria.     

Seasonal patterns in hydrochemical mixing in three Great Lakes rivermouth ecosystems

Rivermouth ecosystems in the Laurentian Great Lakes represent complex hydrologic mixing zones where lake and river water combine to form biologically productive areas that are functionally similar to marine estuaries. As urban, industrial, shipping, and recreational centers, rivermouths are the focus of human interactions with the Great Lakes and, likewise, may represent critical habitat for larval fish and other biota. The hydrology and related geomorphology in these deltaic systems form the basis for ecosystem processes and wetland habitat structure but are poorly understood. To this end, we examined hydrogeomorphic structure and lake-tributary mixing in three rivermouths of intermediate size using water chemistry, stable isotopes, and current profiling over a five-month period. In rivermouths of this size, the maximum depth of the rivermouth ecosystem influenced water mixing, with temperature-related, density-dependent wedging and layering that isolated lake water below river water occurring in deeper systems. The inherent size of the rivermouth ecosystem, local geomorphology, and human modifications such as shoreline armoring and dredging influenced mixing by altering the propensity for density differences to occur. The improved scientific understanding and framework for characterizing hydrogeomorphic processes in Great Lakes rivermouths across a disturbance gradient is useful for conservation, management, restoration, and protection of critical habitats needed by native species.     

DBC Technology for Extremely Thin Flat Heat Pipes

This paper presents the concept and experimental demonstration of flat copper heat pipe (HP) embedded in extremely thin 3-D packaging substrates. Since conventional machining for this application is very complicated and expensive, the direct bonded copper (DBC) technology proved to be interesting for mass production. The experimental results demonstrated that the DBC HP is an excellent solution to enhance the heat transfer within the 3-D packaging.     

Fall diet and bathymetric distribution of deepwater sculpin (Myoxocephalus thompsonii) in Lake Huron

Deepwater sculpin Myoxocephalus thompsonii are an important component of Great Lake's offshore benthic food webs. Recent declines in deepwater sculpin abundance and changes in bathymetric distribution may be associated with changes in the deepwater food web of Lake Huron, particularly, decreased abundance of benthic invertebrates such as Diporeia. To assess how deepwater sculpins have responded to recent changes, we examined a fifteen-year time series of spatial and temporal patterns in abundance as well as the diets of fish collected in bottom trawls during fall of 2003, 2004, and 2005. During 1992–2007, deepwater sculpin abundance declined on a lake-wide scale but the decline in abundance at shallower depths and in the southern portion of Lake Huron was more pronounced. Of the 534 fish examined for diet analysis, 97% had food in the stomach. Mysis, Diporeia, and Chironomidae were consumed frequently, while sphaerid clams, ostracods, fish eggs, and small fish were found in only low numbers. We found an inverse relationship between prevalence of Mysis and Diporeia in diets that reflected geographic and temporal trends in abundance of these invertebrates in Lake Huron. Because deepwater sculpins are an important trophic link in offshore benthic food webs, declines in population abundance and changes in distribution may cascade throughout the food web and impede fish community restoration goals.     

Experience with a test-day model

The Canadian Test-Day Model is a 12-trait random regression animal model in which traits are milk, fat, and protein test-day yields, and somatic cell scores on test days within each of first three lactations. Test-day records from later lactations are not used. Random regressions (genetic and permanent environmental) were based on Wilmink's three parameter function that includes an intercept, regression on days in milk, and regression on an exponential function to the power -0.05 times days in milk. The model was applied to over 22 million test-day records of over 1.4 million cows in seven dairy breeds for cows first calving since 1988. A theoretical comparison of test-day model to 305-d complete lactation animal model is given. Each animal in an analysis receives 36 additive genetic solutions (12 traits by three regression coefficients), and these are combined to give one estimated breeding value (EBV) for each of milk, fat, and protein yields, average daily somatic cell score and milk yield persistency (for bulls only). Correlation of yield EBV with previous 305-d lactation model EBV for bulls was 0.97 and for cows was 0.93 (Holsteins). A question is whether EBV for yield traits for each lactation should be combined into one overall EBV, and if so, what method to combine them. Implementation required development of new methods for approximation of reliabilities of EBV, inclusion of cows without test day records in analysis, but which were still alive and had progeny with test-day records, adjustments for heterogeneous herd-test date variances, and international comparisons. Efforts to inform the dairy industry about changes in EBV due to the model and recovering information needed to explain changes in specific animals' EBV are significant challenges. The Canadian dairy industry will require a year or more to become comfortable with the test-day model and to realize the impact it could have on selection decisions.     

Relationships between H-NS, sigma S, SpvR and growth phase in the control of spvR, the regulatory gene of the Salmonella plasmid virulence operon

We propose that chronically denervated Schwann cells may be less able to respond to axonal signals than their acutely denervated counterparts, and that this lack of sensitivity may be one reason why axons fail to regenerate into chronically denervated nerve stumps. To test this proposal we have used in situ hybridization, and quantitative and qualitative immunohistochemistry to compare the expression of c-erbB2 and c-erbB4 receptors in Schwann cells denervated for up to 6 months in vivo, with that seen in Schwann cells denervated for similar periods of time but then exposed to regenerating axons. The results were correlated with the extent of axonal regeneration in each experimental group as assessed from transverse sections which had been double-immunolabelled using anti S-100 and anti-beta tubulin III antibodies. Since c-erbBs are receptors for neuronally derived neuregulins we probed the appropriate axotomised DRG neurons for expression of GGF2 mRNA. When the denervated distal stumps were anastomosed to acutely transected proximal stumps, GGF expression in DRGs increased transiently during the first week: we assume that secreted GGF2 derived from regrowing axon sprouts would have been available to Schwann cells in all distal stumps. Endoneurial cell proliferation (predominantly Schwann cell proliferation); levels of expression of c-erbB receptors by Schwann cells, and the degree to which axons regenerated into the distal stumps all decreased as the period of prior denervation increased: the longer the time of denervation, the lower the expression of c-erbBs in Schwann cells, and the smaller the percentage of bands of Bungner which were re-innervated.     

Rehabilitation of dogs with surgically treated cranial cruciate ligament-deficient stifles by use of electrical stimulation of muscles

OBJECTIVE: To determine effect of electrical muscle stimulation (EMS) on rate and degree of return to function of the limb and development of degenerative joint disease (DJD) after surgical creation and subsequent stabilization of the cranial cruciate ligament (CrCL)-deficient stifle. ANIMALS: 12 clinically normal adult large (19.5 to 31.5 kg) dogs. PROCEDURE: Dogs were anesthetized, and the right CrCL was severed via arthrotomy, destabilizing the stifle. After 3 weeks, the stifle was surgically stabilized. Three weeks later, 6 dogs were subjected to an EMS treatment protocol for the thigh muscles. At 5, 9, 13, and 19 weeks after stifle destabilization, treated (n = 6) and control (n = 6) dogs were evaluated for return of stifle function. Gross and histologic evaluations of the stifles were performed at 19 weeks after stifle destabilization. RESULTS: Treated dogs had significantly (P = 0.001) better lameness score than did control dogs. There was less palpable crepitation of the stifle in treated dogs (P = 0.06); treated dogs also had significantly (P = 0.01) fewer radiographic signs of bone changes. Thigh circumference was significantly (P = 0.02) larger in treated dogs. There was less gross cartilage damage (P = 0.07) in the EMS-treated dogs, but more medial meniscal damage (P = 0.058, cranial pole; P = 0.051, caudal pole). CONCLUSIONS: Improved lameness scores, larger thigh circumference, and decreased radiographically apparent bony changes observed for the treated group of dogs support the hypothesis that dogs treated by EMS after surgical stabilization of the CrCL-deficient stifle had improved limb function, with less DJD, than did dogs treated with the currently accepted clinical protocol of cage rest and slow return to normal activity. However, results of force plate evaluation did not support the hypothesis. Increased meniscal damage in dogs treated by EMS may be cause for concern.     

Improved Electrical Properties of ALD Hfx Zr1 − xO2 Dielectrics Deposited on Ultrathin PVD Zr Underlayer

The impact of ultrathin metal underlayer on physical and electrical properties of Hf _x Zr_{1- x} O₂(x=~0.4) after high-temperature processing was investigated. An ~5-Aring Zr, ~5-Aring Hf, ~10-Aring Hf metal layer was sputter deposited prior to Hf _x Zr_{1- x} O₂ growth. Cross-sectional transmission electron microscopy and secondary ions mass spectrometry analysis confirmed no Zr or Hf silicide formation between the high-k film and Si substrate even after 1000degC processing. No significant increase in equivalent oxide thickness or gate leakage current is observed on devices with metal underlayer. Furthermore, devices with a 5-Aring-thick Zr underlayer exhibited lower threshold voltage, higher mobility, and improved charge trapping characteristics.