Automated iterative MS/MS acquisition: a tool for improving efficiency of protein identification using a LC-MALDI MS workflow

We have developed an information-dependent, iterative MS/MS acquisition (IMMA) tool for improving MS/MS efficiency, increasing proteome coverage, and shortening analysis time for high-throughput proteomics applications based on the LC-MALDI MS/MS platform. The underlying principle of IMMA is to limit MS/MS analyses to a subset of molecular ions that are likely to identify a maximum number of proteins. IMMA reduces redundancy of MS/MS analyses by excluding from the precursor ion peak lists proteotypic peptides derived from the already identified proteins and uses a retention time prediction algorithm to limit the degree of false exclusions. It also increases the utilization rate of MS/MS spectra by removing "low value" unidentifiable targets like nonpeptides and peptides carrying large loads of modifications, which are flagged by their "nonpeptide" excess-to-nominal mass ratios. For some samples, IMMA increases the number of identified proteins by ～20-40% when compared to the data dependent methods. IMMA terminates an MS/MS run at the operator-defined point when "costs" (e.g., time of analysis) start to overrun "benefits" (e.g., number of identified proteins), without prior knowledge of sample contents and complexity. To facilitate analysis of closely related samples, IMMA's inclusion list functionality is currently under development.     

Visual indication of mechanical damage using core-shell microcapsules

We report a new core-shell microcapsule system for the visual detection of mechanical damage. The core material, 1,3,5,7-cyclooctatetraene, is a conjugated cyclic olefin and a precursor to intensely colored polyacetylene. A combination of poly(urea-formaldehyde) and polyurethane is required to effectively encapsulate the volatile core material. Increasing the outer shell wall thickness and including a core-side prepolymer improves the thermal stability and free-flowing nature of these capsules, which tend to leach and rupture with thinner shell walls. Capsules ruptured in the presence of the Grubbs-Love ruthenium catalyst show immediate color change from nearly colorless to red-orange and dark purple over time, and color change in thin films resulted from scratch damage.     

“What's to keep you from dropping out?” Student Immigration into and within Engineering

Nearly one‐half of the industrial engineering undergraduate interviewees in an investigation of their degree program indicated they previously had been enrolled in another major. Understanding why these students chose to remain in or enter a science, technology, engineering and math (STEM) major when their previous choice lost its appeal is an important piece of the STEM participation puzzle. Our data indicate effective formal and informal recruiting, contact with dynamic individuals who conveyed commitment to and excitement about the department and program, and a department that welcomed immigrants and promoted a clear, relevant image of its discipline's identity, influenced student decisions to relocate within STEM rather than attrite. The high proportion of females within the immigrant students is one factor contributing to the department's attainment of sex parity. Our students' stories offer lessons to other departments for attracting and retaining students who enter the higher education STEM pipeline.