Applications of wavelet data reduction in a recommender system

Memory-based collaborative filtering (CF) recommender systems have emerged as an effective technique for information filtering. CF recommenders are being widely adopted for e-commerce applications to assist users in finding and selecting items of interest. As a result, the scalability of CF recommenders presents a significant challenge; one that is particularly resilient because the volume of data these systems utilize will continue to increase over time. This paper examines the impact of discrete wavelet transformation (DWT) as an approach to enhance the scalability of memory-based collaborative filtering recommender systems. In particular, a wavelet transformation methodology is proposed and applied to both synthetic and real-world recommender ratings. For experimental purposes, the DWT methodology’s effect on predictive accuracy and calculation speed is evaluated to compare recommendation quality and performance.     

Characterisation of flucloxacillin and 5-hydroxymethyl flucloxacillin haptenated HSA in vitro and in vivo

Flucloxacillin is a synthetic penicillin used in the treatment of Staphylococcal infections. Adverse reactions to the drug are believed to arise through covalent modification of proteins, with tissue damage occurring secondary to an immune reaction. Serum proteins have been shown by adduct-specific antibodies to be modified by flucloxacillin, but the nature and sites of modification have not been characterised. Here, in vitro studies on HSA have shown by MS that the modification of protein lysine residues occurs in a dose-, time- and site-dependent manner. Affinity, cation exchange and reversed phase chromatography prior to MS revealed in vivo modification of HSA with flucloxacillin in tolerant patients, with up to nine modified lysine residues being detected in each patient, and with modification of Lys190 and Lys212 being detected in 8/8 patients. It was also revealed for the first time that plasma proteins could be modified with the 5-hydroxymethyl metabolite of flucloxacillin, and that essentially the same Lys residues were targeted by both the parent drug and its metabolite. This study provides a detailed characterisation of sites of chemical modification of an endogenous target and reveals candidate peptides for T-cell and antibody assays of flucloxacillin hypersensitivity.     

Insights into virus capsid assembly from non-covalent mass spectrometry

The assembly of viral proteins into a range of macromolecular complexes of strictly defined architecture is one of Nature's wonders. Unraveling the details of these complex structures and the associated self-assembly pathways that lead to their efficient and precise construction will play an important role in the development of anti-viral therapeutics. It will also be important in bio-nanotechnology where there is a plethora of applications for such well-defined macromolecular complexes, including cell-specific drug delivery and as substrates for the formation of novel materials with unique electrical and magnetic properties. Mass spectrometry has the ability not only to measure masses accurately but also to provide vital details regarding the composition and stoichiometry of intact, non-covalently bound macromolecular complexes under near-physiological conditions. It is thus ideal for exploring the assembly and function of viruses. Over the past decade or so, significant advances have been made in this field, and these advances are summarized in this review, which covers the literature up to the end of 2007.     

Ontology-based user profile learning

Personal agents gather information about users in a user profile. In this work, we propose a novel ontology-based user profile learning. Particularly, we aim to learn context-enriched user profiles using data mining techniques and ontologies. We are interested in knowing to what extent data mining techniques can be used for user profile generation, and how to utilize ontologies for user profile improvement. The objective is to semantically enrich a user profile with contextual information by using association rules, Bayesian networks and ontologies in order to improve agent performance. At runtime, we learn which the relevant contexts to the user are based on the user’s behavior observation. Then, we represent the relevant contexts learnt as ontology segments. The encouraging experimental results show the usefulness of including semantics into a user profile as well as the advantages of integrating agents and data mining using ontologies.     

Towards an algebraic theory of information integration

Information integration systems provide uniform interfaces to varieties of heterogeneous information sources. For query answering in such systems, the current generation of query answering algorithms in local-as-view (source-centric) information integration systems all produce what has been thought of as “the best obtainable” answer, given the circumstances that the source-centric approach introduces incomplete information into the virtual global relations. However, this “best obtainable” answer does not include all information that can be extracted from the sources because it does not allow partial information. Neither does the “best obtainable” answer allow for composition of queries, meaning that querying a result of a previous query will not be equivalentto the composition of the two queries. In this paper, we provide a foundation for information integration, based on the algebraic theory of incomplete information. Our framework allows us to define the semantics of partial facts and introduce the notion of the exact answer—that is the answer that includes partial facts. We show that querying under the exact answer semantics is compositional. We also present two methods for actually computing the exact answer. The first method is tableau-based, and it is a generalization of the “inverse-rules” approach. The second, much more efficient method, is a generalization of the rewriting approach, and it is based on partial containment mappings introduced in the paper.     

Physical and Sexual Intimate Partner Violence Among Women in Methadone Maintenance Treatment.

Although several studies have examined the relationship between intimate partner violence (IPV) and drug use among women in drug treatment programs, more information is needed to delineate differences, as a function of the specific drug used. Data from a random sample of 416 women attending methadone programs were analyzed to elucidate the differential associations between IPV and use of the following: marijuana only, cocaine only, heroin only, or cocaine and heroin. Prevalence of IPV among this sample far exceeded estimates from the general population. After adjusting for sociodemographic variables, use of cocaine only was significantly associated with an increased likelihood of experiencing IPV compared with no drug use. Similar results were found for women using both cocaine and heroin. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Disease Recurrence during Adjuvant Immune Checkpoint Inhibitor Treatment in Metastatic Melanoma: Clinical,Laboratory, and Radiological Characteristics in Patients from a Single Tertiary Referral Center

Despite the dramatic improvements in recurrence-free survival in patients with metastatic melanoma treated with immune checkpoint inhibitors (ICI), a number of patients develop metastases during adjuvant therapy. It is not currently possible to predict which patients are most likely to develop disease recurrence due to a lack of reliable biomarkers. Thus, we retrospectively analyzed the case records of all patients who commenced adjuvant ICI therapy between January 2018 and December 2021 in a single university skin cancer center (n = 46) (i) to determine the rates of disease recurrence, (ii) to examine the utility of established markers, and (iii) to examine whether re-challenge with immunotherapy resulted in clinical response. Twelve out of forty-six (26%) patients developed a relapse on adjuvant immunotherapy in our cohort, and the median time to relapse was 139 days. Adjuvant immunotherapy was continued in three patients. Of the twelve patients who developed recurrence during adjuvant immunotherapy, seven had further disease recurrence within the observation period, with a median time of 112 days after the first progress. There was no significant difference comparing early recurrence (<180 days after initiation) on adjuvant immunotherapy to late recurrence (>180 days after initiation) on adjuvant immunotherapy. Classical tumor markers, including serum lactate dehydrogenase (LDH) and S-100, were unreliable for the detection of disease recurrence. Baseline lymphocyte and eosinophil counts and those during immunotherapy were not associated with disease recurrence. Interestingly, patients with NRAS mutations were disproportionately represented (60%) in the patients who developed disease recurrence, suggesting that these patients should be closely monitored during adjuvant therapy.     

A Role of DNA Methylation within the CYP17A1 Gene in the Association of Genetic and Environmental Risk Factors with Stress-Related Manifestations of Schizophrenia

As genetic and environmental influences on schizophrenia might converge on DNA methylation (DNAm) within loci which are both associated with the disease and implicated in response to environmental stress, we examined whether DNAm within CYP17A1, a hypothalamus–pituitary–adrenal axis gene which is situated within the schizophrenia risk locus 10q24.32, would mediate genetic and environmental effects on stress-related schizophrenia symptoms. DNAm within an exonic–intronic fragment of CYP17A1 was assessed in the blood of 66 schizophrenia patients and 63 controls using single-molecule real-time bisulfite sequencing. Additionally, the VNTR polymorphism of the AS3MT gene, a plausible causal variant within the 10q24.32 locus, was genotyped in extended patient and control samples (n = 700). The effects of local haplotype, VNTR and a polyenviromic risk score (PERS) on DNAm, episodic verbal memory, executive functions, depression, and suicidality of patients were assessed. Haplotype and PERS differentially influenced DNAm at four variably methylated sites identified within the fragment, with stochastic, additive, and allele-specific effects being found. An allele-specific DNAm at CpG-SNP rs3781286 mediated the relationship between the local haplotype and verbal fluency. Our findings do not confirm that the interrogated DNA fragment is a place where genetic and environmental risk factors converge to influence schizophrenia symptoms through DNAm.