Defect formation in epitaxial crystal growth

Factors affecting the nucleation and propagation of dislocations, stacking faults, microtwins, and inversion domain boundaries in epitaxially grown semiconductor layers are reviewed, with examples for heteroepitaxial MBE-grown layers on substrates having varying degrees of mismatch or different crystal symmetry. Mechanisms for generation of defects at the heterointerface and in the epilayer are discussed. For epilayers with bulk mismatch from 0 to 4%, methods for reducing defect density in the epitaxial layer are considered. Examples of structural details in the epilayers and at heterointerfaces, particularly those which may be revealed by transmission electron microscopy, are given.     

Synthesis and characterization of cross‐linked poly(sodium acrylate)/sodium silicate hydrogels

Transparent and intumescent polymer‐silicate hydrogels were synthesized by free‐radical polymerization, in the presence of the redox initiators system (potassium persulphate/sodium thiosulphate) and cross‐linking monomer (N,N′‐methylenebisacrylamide). Hydrogels obtained in such a manner were rheologically tested and it was found that the same sample with a different sodium acrylate concentration polymerized faster when its content was lower. The spectroscopic and thermal analysis proved that the polymer combines with sodium silicate by hydrogen bonds and during thermal degradation only small polymer fragments and water molecules were released. NMR studies have shown that the content of water glass causes shorter relaxation times. Conducted fire tests showed that glass panes systems filled with the tested hydrogels meet the relevant construction standards and what is their big advantage, a thin 1 mm layer of polymer‐silicate gel is sufficient for this purpose. We believe that these results will contribute to the development of intumescent hydrogels with enhanced fire‐retardant properties. POLYM. ENG. SCI., 59:1279–1287 2019. © 2019 Society of Plastics Engineers     

Properties of Non-Aminoglycoside Compounds Used to Stimulate Translational Readthrough of PTC Mutations in Primary Ciliary Dyskinesia

Primary ciliary dyskinesia (PCD) is a rare disease with autosomal recessive inheritance, caused mostly by bi-allelic gene mutations that impair motile cilia structure and function. Currently, there are no causal treatments for PCD. In many disease models, translational readthrough of premature termination codons (PTC-readthrough) induced by aminoglycosides has been proposed as an effective way of restoring functional protein expression and reducing disease symptoms. However, variable outcomes of pre-clinical trials and toxicity associated with long-term use of aminoglycosides prompt the search for other compounds that might overcome these problems. Because a high proportion of PCD-causing variants are nonsense mutations, readthrough therapies are an attractive option. We tested a group of chemical compounds with known PTC-readthrough potential (ataluren, azithromycin, tylosin, amlexanox, and the experimental compound TC007), collectively referred to as non-aminoglycosides (NAGs). We investigated their PTC-readthrough efficiency in six PTC mutations found in Polish PCD patients, in the context of cell and cilia health, and in comparison to the previously tested aminoglycosides. The NAGs did not compromise the viability of the primary nasal respiratory epithelial cells, and the ciliary beat frequency was retained, similar to what was observed for gentamicin. In HEK293 cells transfected with six PTC-containing inserts, the tested compounds stimulated PTC-readthrough but with lower efficiency than aminoglycosides. The study allowed us to select compounds with minimal negative impact on cell viability and function but still the potential to induce PTC-readthrough.     

The Mutation in wbaP cps Gene Cluster Selected by Phage-Borne Depolymerase Abolishes Capsule Production and Diminishes the Virulence of Klebsiella pneumoniae

Klebsiella pneumoniae is considered one of the most critical multidrug-resistant pathogens and urgently requires new therapeutic strategies. Capsular polysaccharides (CPS), lipopolysaccharides (LPS), and exopolysaccharides (EPS) are the major virulence factors protecting K. pneumoniae against the immune response and thus may be targeted by phage-based therapeutics such as polysaccharides-degrading enzymes. Since the emergence of resistance to antibacterials is generally considered undesirable, in this study, the genetic and phenotypic characteristics of resistance to the phage-borne CPS-degrading depolymerase and its effect on K. pneumoniae virulence were investigated. The K63 serotype targeting depolymerase (KP36gp50) derived from Klebsiella siphovirus KP36 was used as the selective agent during the treatment of K. pneumoniae 486 biofilm. Genome-driven examination combined with the surface polysaccharide structural analysis of resistant mutant showed the point mutation and frameshift in the wbaP gene located within the cps gene cluster, resulting in the loss of the capsule. The sharp decline in the yield of CPS was accompanied by the production of a larger amount of smooth LPS. The modification of the surface polysaccharide layers did not affect bacterial fitness nor the insensitivity to serum complement; however, it made bacteria more prone to phagocytosis combined with the higher adherence and internalization to human lung epithelial cells. In that context, it was showed that the emerging resistance to the antivirulence agent (phage-borne capsule depolymerase) results in beneficial consequences, i.e., the sensitization to the innate immune response.     

Negative incremental resistance induced by calcium in asymmetric nanopores

Single polymer nanopores with permanent surface charges act as rectifiers of ionic current. The pores are tapered cones with narrow openings of several nanometers and wide openings of approximately 1 mum. The pores are cation-selective, and in symmetric solutions of potassium chloride they rectify the flow of potassium ions from the small opening toward the wide opening. Millimolar concentrations of calcium reverse the rectification, and a negative incremental resistance is observed. These observations can be interpreted by a model containing flashing ratchets.     

Electric-field-induced wetting and dewetting in single hydrophobic nanopores

The behaviour of water in nanopores is very different from that of bulk water. Close to hydrophobic surfaces, the water density has been found to be lower than in the bulk, and if confined in a sufficiently narrow hydrophobic nanopore, water can spontaneously evaporate. Molecular dynamics simulations have suggested that a nanopore can be switched between dry and wet states by applying an electric potential across the nanopore membrane. Nanopores with hydrophobic walls could therefore create a gate system for water, and also for ionic and neutral species. Here, we show that single hydrophobic nanopores can undergo reversible wetting and dewetting due to condensation and evaporation of water inside the pores. The reversible process is observed as fluctuations between conducting and non-conducting ionic states and can be regulated by a transmembrane electric potential.