Algorithms for testing that sets of DNA words concatenate without secondary structure

We present an efficient algorithm for determining whether all moleculesin a combinatorial set of DNA or RNA strandsare structure free, and thus availablefor bonding to their Watson-Crick complements.This work is motivated by the goalof testing whether strands used in DNAcomputations or as molecular bar-codesare structure free, where the strands areconcatenations of short words. We alsopresent an algorithm for determining whetherall words in S*, for some finite setS of equi-length words, are structure free. This revised version was published online in June 2006 with corrections to the Cover Date.     

The design of autonomous DNA nano-mechanical devices: Walking and rolling DNA

We provide designs for the first autonomousDNA nanomechanical devices that execute cycles of motion without external environmental changes. These DNA devices translate along a circular strand of ssDNA and rotate simultaneously. The designs use various energy sources to fuel the movements, include (i) ATP consumption by DNA ligase in conjunction with restriction enzyme operations, (ii) DNA hybridization energy in trapped states, and (iii) kinetic (heat) energy. We show that each of these energy sources can be used to fuel random bidirectional movements that acquire after n steps an expected translational deviation of O(√n). For the devices using the first two fuel sources, the rate of stepping is accelerated over the rate of random drift due to kinetic (heat) energy. Our first DNA device, which we call walking DNA, achieves random bidirectional motion around a circular ssDNA strand by use of DNA ligase and two restriction enzymes. Our other DNA device, which we call rolling DNA, achieves random bidirectional motion without use of DNA ligase or any restriction enzyme, and instead using hybridization energy. We also describe how to modify the design for the rolling DNA device to include a ``latching mechanism' that fixes the wheels position at specified location along the road, so as to provide for overall unidirectional translational movement. This revised version was published online in June 2006 with corrections to the Cover Date.     

基于组件的网上教务管理系统

指出目前普通高校教务管理在网络化和集成化程度不高的现象，并针对此情况，提出了一种用COM^ 构筑基于WindowsDNA的教务管理系统开发模式。     

分析比较Windows DNA支持的数据访问技术

本文在介绍Windows DNA体系结构的基础上，详细分析了WindowsDNA支持的ODBC、OLD DB和ADO三种数据访问的体系结构，应用方法及特点。     

Orphan gene finding—an exon assembly approach

This paper introduces an algorithm for finding eukaryotic genes. It particularly addresses the problem of orphan genes, that is of genes that cannot, based on homology alone, be connected to any known gene family and to which it is therefore not possible to apply traditional gene finding methods. To the best of our knowledge, this is also the first algorithm that attempts to compare in an exact way two DNA sequences that contain both coding (i.e. exonic) and non-coding (i.e. intronic and, possibly, intergenic) parts. The comparison is performed following an algorithmical model of a gene that is as close as possible to the biological one (we consider in this paper the “one ORF, one gene” problem only). A gene is seen as a set of exons that are pieces of an assembly and are not independent. The algorithm is efficient enough: although the constants are higher than for usual sequence comparison, its time complexity is proportional to the product of the sequences lengths while its space complexity scales linearly with the length of the smallest sequence.     

巨龙竹基因组DNA的提取及RAPD反应条件的优化

用改良CTAB法从巨龙竹硅胶干燥的叶片中提取基因组DNA，成功地进行RAPD扩增，通过正交法以RAPD反应条件优化。6个试验因子的最适条件为：模板DNA1－1.5ng/μl，引物0.8-1.0μmol/L,dNTPs0.1-0.5mmol/L,Mg^2 2.0-2.5mmol/L,Taq酶0.5-1.0U，退火温度35－36℃。     

数据存储结构与检索效率关系的研究--关于DNA数据存储结构与比对效率

数据库系统区别于其他系统的重要方面之一是DBMS具有有效地处理非常大量数据的能力,但随着数据量的增长,数据的检索速度日益捉襟见肘,如何提高数据的检索效率逐渐受到重视,特别是在一些特殊领域对数据的实时性要求较高的情况下,更需要快速的数据检索.本文正是基于此考虑,以DNA的数据存储为例,针对DNA数据的特点及实际比对的需要,通过具体的数据库实现技术,分析了存储结构对数据库访问速度的影响,在此基础上通过对几个具体方案的实际测试,给出了一个相对较优的数据库存储结构解决方案.     

基于XML技术的分布式现场总线远程监控系统设计

针对传统的基于OPC技术的现场总线监控系统存在的若干问题和现场总线远程监控的要求，在微软的Windows分布式Internet结构开发模型基础上，结合XML和SOAP分布式组件模式技术，提出了一种新的分布式现场总线远程监控系统框架体系结构．这个体系结构解决了传统监控系统所存在的问题，使现场总线远程监控成为可能，并使系统具有良好的扩展性．     

光谱和电化学法研究栎精与DNA的相互作用

用紫外-可见光谱法、循环伏安法及线性扫描伏安法研究了栎精(QUE)与DNA在0·01 mol·L-1的NaOAc-HOAc缓冲溶液(pH=4.2)中的相互作用。研究表明,栎精本身具有良好的电化学行为,DNA的加入能导致栎精氧化还原峰电流显著降低。通过测定DNA引入前后体系的一些电化学参数的变化,说明DNA与栎精在该条件下结合生成了一种结合比n(DNA):n(QUE)=1:2的非电活性超分子化合物,条件结合常数为1.3×104。讨论了二者之间的结合模式,二者之间可能同时存在着静电作用和嵌入作用。     

藏红T与DNA相互作用的电化学及紫外-可见光谱研究

利用循环伏安法研究了藏红T(ST)在玻碳电极上的电化学反应,结合紫外-可见光谱(UV／Vis)对藏红T与DNA的作用机理进行了研究,并通过测定藏红T对溴化乙锭-天然DNA体系的影响,以及天然DNA和变性DNA与藏红T作用的不同,得出藏红T与DNA发生类似溴化乙锭的嵌插作用的结论,形成了2ST-DNA结合物,结合常数为3.46×104L2·mol-2。