激光与DNA作用系统的随机共振研究

建立了激光与ＤＮＡ分子系统相互作用的Ｆｏｋｋｅｒ－Ｐｌａｎｃｋ方程，通过对该方程的数值研究，发现在绝热近似下，系统发生随机共振，噪声强度，激光振幅和频率协同作用共同制约着生物系统的演化过程，噪声强度在生物系统遗传变异过程中可能起重要作用。     

Electron microscopic observations and DNA chain fragmentation studies on apoptosis in bone tumor cells induced by ~(153)Sm-EDTMP

ＥｌｅｃｔｒｏｎｍｉｃｒｏｓｃｏｐｉｃｏｂｓｅｒｖａｔｉｏｎｓａｎｄＤＮＡｃｈａｉｎｆｒａｇｍｅｎｔａｔｉｏｎｓｔｕｄｉｅｓｏｎａｐｏｐｔｏｓｉｓｉｎｂｏｎｅｔｕｍｏｒｃｅｌｓｉｎｄｕｃｅｄｂｙ１５３ＳｍＥＤＴＭＰＺｈｕＳｈｏｕＰｅｎｇ，Ｘｉａ...     

基于中值滤波和梯度锐化的边缘检测

实现一种基于中值滤波和梯度锐化的边缘检测方法。首先采用既能过滤噪声又能保护边缘信息的中值滤波对图像进行平滑处理。然后采用梯度锐化加强边缘像素强度,通过简单的二值化获得图像的初始边缘,系统采用连通区域标记的方法去除位于图像封闭边界内的残留黑块。最后通过实验结果与人工提取的结果比较,进行误差分析,找出本文算法的不足之处,以便对该算法进行改进。实践证明,本文的边缘检测方法对含有噪声点且灰度分布比较均匀的图像有很好的效果。     

深度学习的人体图像半自动标注系统

针对目前数据标注过于依赖硬件、手动数据标注效率低下的问题,提出了基于深度学习的人体图像半自动标注系统.系统通过对算法进行改进,增加人体关键点个数进行特征提取和加入运动信息的约束,提高了视频分阶段标注的准确率.使用真实数据集仿真实验证明了通过深度学习算法进行数据标注的可行性,并且使用半自动标注的速度快、准确率高.     

基于字典的DNA序列压缩算法研究及应用*

在现有DNA序列数据压缩算法的基础上,以DNA序列数据的存储效率及生物学解释综合考虑,设计并实现了基于字典的DNA序列压缩算法DNADCompress.算法核心包括重复子串字典建立、字典项筛选、字串压缩编码三方面.实验数据表明,数据压缩算法压缩效果达到常用DNA序列压缩算法水平,并为序列生物学解释提供了基础.     

A “Three-in-One” Multifunctional Probe for Bcl-2/Mcl-1 Profiling and Visualizing in Situ

Bcl-2 and Mcl-1, the two arms of the anti-apoptotic Bcl-2 family proteins, have been identified as key regulators of apoptosis and effective therapeutic targets of cancer. However, no small-molecular probe is capable of profiling and visualizing both Bcl-2 and Mcl-1 simultaneously in situ. Herein, we report a multifunctional molecular probe (BnN₃-OPD-Alk) by a “three-in-one” molecular designing strategy, which integrated the Bcl-2/Mcl-1 binding ligand, fluorescent reporter group and photoreactive group azido into the same scaffold. BnN₃-OPD-Alk exhibited sub-micromolar affinities to Bcl-2/Mcl-1 and bright green self-fluorescence. It was then successfully applied for Bcl-2/Mcl-1 labeling, capturing, enriching, and bioimaging both in vitro and in cells. This strategy could facilitate the precise early diagnosis and effective therapy of dual Bcl-2/Mcl-1-related diseases.     

Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase

With increasing temperature, nucleobases in DNA become increasingly damaged by hydrolysis of exocyclic amines. The most prominent damage includes the conversion of cytosine to uracil and adenine to hypoxanthine. These damages are mutagenic and put the integrity of the genome at risk if not repaired appropriately. Several archaea live at elevated temperatures and thus, are exposed to a higher risk of deamination. Earlier studies have shown that DNA polymerases of archaea have the property of sensing deaminated nucleobases in the DNA template and thereby stalling the DNA synthesis during DNA replication providing another layer of DNA damage recognition and repair. However, the structural basis of uracil and hypoxanthine sensing by archaeal B-family DNA polymerases is sparse. Here we report on three new crystal structures of the archaeal B-family DNA polymerase from Thermococcus kodakarensis (KOD) DNA polymerase in complex with primer and template strands that have extended single stranded DNA template 5’-overhangs. These overhangs contain either the canonical nucleobases as well as uracil or hypoxanthine, respectively, and provide unprecedented structural insights into their recognition by archaeal B-family DNA polymerases.     

Efficient Linear dsDNA Tagging Using Deoxyuridine Excision**

Site-specific strategies for exchanging segments of dsDNA are important for DNA library construction and molecular tagging. Deoxyuridine (dU) excision is an approach for generating 3’ ssDNA overhangs in gene assembly and molecular cloning procedures. Unlike approaches that use a multi-base pair motif to specify a DNA cut site, dU excision requires only a dT→dU substitution. Consequently, excision sites can be embedded in biologically active DNA sequences by placing dU substitutions at non-perturbative positions. In this work, I describe a molecular tagging method that uses dU excision to exchange a segment of a dsDNA strand with a long synthetic oligonucleotide. The core workflow of this method, called deoxyUridine eXcision-tagging (dUX-tagging), is an efficient one-pot reaction: strategically positioned dU nucleotides are excised from dsDNA to generate a 3’ overhang so that additional sequence can be appended by annealing and ligating a tagging oligonucleotide. The tagged DNA is then processed by one of two procedures to fill the 5’ overhang and remove excess tagging oligo. To facilitate its widespread use, all dUX-tagging procedures exclusively use commercially available reagents. As a result, dUX-tagging is a concise and easily implemented approach for high-efficiency linear dsDNA tagging.