CPU demand for web serving: Measurement analysis and dynamic estimation

Managing the resources in a large Web serving system requires knowledge of the resource needs for service requests of various types. In order to investigate the properties of Web traffic and its demand, we collected measurements of throughput and CPU utilization and performed some data analyses. First, we present our findings in relation to the time-varying nature of the traffic, the skewness of traffic intensity among the various types of requests, the correlation among traffic streams, and other system-related phenomena. Then, given such nature of web traffic, we devise and implement an on-line method for the dynamic estimation of CPU demand.

Assessing resource needs is commonly performed using techniques such as off-line profiling, application instrumentation, and kernel-based instrumentation. Little attention has been given to the dynamic estimation of dynamic resource needs, relying only on external and high-level measurements such as overall resource utilization and request rates. We consider the problem of dynamically estimating dynamic CPU demands of multiple kinds of requests using CPU utilization and throughput measurements. We formulate the problem as a multivariate linear regression problem and obtain its basic solution. However, as our measurement data analysis indicates, one is faced with issues such as insignificant flows, collinear flows, space and temporal variations, and background noise. In order to deal with such issues, we present several mechanisms such as data aging, flow rejection, flow combining, noise reduction, and smoothing. We implemented these techniques in a Work Profiler component that we delivered as part of a broader system management product. We present experimental results from using this component in scenarios inspired by real-world usage of that product.     

Quantitative analysis of packet-processing applications regarding architectural guidelines for network-processing-engine development

This paper presents a simulation-based profile-driven quantitative analysis of packet-processing applications. In this domain, demands for increasing the performance and the ongoing development of network protocols both call for flexible and performance-optimized engines. Based on the achieved profiling results, we introduce platform-independent analysis that locates the performance bottlenecks and architectural challenges of a packet-processing engine. Finally based on these results, we extract helpful architectural guidelines for design of a flexible and high-performance embedded processor that is optimized for packet-processing operations in high-performance and cost-sensitive network embedded applications.     

Redox proteomics identification of 4‐hydroxynonenal‐modified brain proteins in Alzheimer's disease: Role of lipid peroxidation in Alzheimer's disease pathogenesis

Numerous studies have shown that neuronal lipids are highly susceptible to oxidative stress including in those brain areas directly involved in the neurodegenerative process of Alzheimer's disease (AD). Lipid peroxidation directly damages membranes and also generates a number of secondary biologically active products (toxic aldehydes)that are capable of easily attacking lipids, proteins, and DNA. Accumulating evidence has demonstrated regionally increased brain lipid peroxidation in patients with AD; however, extensive studies on specific targets of lipid peroxidation‐induced damage are still missing. The present study represents a further step in understanding the relationship between oxidative modification of protein and neuronal death associated with AD. We used a proteomics approach to determine specific targets of lipid peroxidation in AD brain, both in hippocampus and inferior parietal lobule, by coupling immunochemical detection of 4‐hydroxynonenal‐bound proteins with 2‐D polyacrylamide gel electrophoresis and MS analysis. We identified 4‐hydroxynonenal‐bound proteins in the hippocampus and inferior parietal lobule brain regions of subjects with AD. The identified proteins play different biological functions including energy metabolism, antioxidant system, and structural proteins, thus impairing multiple molecular pathways. Our results provide further evidence for the role of lipid peroxidation in the pathogenesis of AD.     

Aberrant protein expression in plasma and kidney tissue during experimental obstructive nephropathy

Kidney failure is a major health problem worldwide. Patients with end-stage renal disease require intensive medical support by dialysis or kidney transplantation. Current methods for diagnosis of kidney disease are either invasive or insensitive, and renal function may decline by as much as 50% before it can be detected using current techniques. The goal of this study was, therefore, to identify biomarkers of kidney disease (associated with renal fibrosis) that can be used for the development of a non-invasive clinical test for early disease detection. We utilized two protein-profiling technologies (SELDI-TOF MS and 2-D) to screen the plasma and kidney proteome for aberrantly expressed proteins in an experimental mouse model of unilateral uretric obstruction, which mimics the pathology of human renal disease. Several differentially regulated proteins were detected at the plasma level of day-3-obstructed animals, which included serum amyloid A1, fibrinogen α, haptoglobin precursor protein, haptoglobin and major urinary proteins 11 and 8. Differentially expressed proteins detected at the tissue level included ras-like activator protein 2, haptoglobin precursor protein, malate dehydrogenase, α enolase and murine urinary protein (all p<0.05 versus controls). Immunohistochemistry was used to confirm the up-regulation of fibrinogen. Interestingly, these proteins are largely separated into four major classes: (i) acute-phase reactants (ii) cell-signaling molecules (iii) molecules involved in cell growth and metabolism and (iv) urinary proteins. These results provide new insights into the pathology of obstructive nephropathy and may facilitate the development of specific assay(s) to detect and monitor renal fibrosis.     

基于支持向量机的特征提取方法研究

基因表达数据的一个重要应用是给组织样本进行分类。在基因表达数据中,基因的数量相对于数据样本的个数通常比较多;也就是说,可以得到变量数（基因数）远远大于样本数的数据矩阵。过高的维数（变量或基因数）将给分类问题带来极大的挑战。本文提出结合一种新的特征提取方法——非相关线性判别式分析方法（ULDA）和支持向量机（SVM）分类算法,对结肠癌组织样本进行分类识别。并同其它方法作了比较研究,结果表明了该方法的可行性和有效性。     

Topical delivery of paclitaxel for treatment of skin cancer

Context: Skin cancer represents the most growing types of cancer in human and ultraviolet radiation can be cited as one of the prime factor for its occurrence. Current therapy of skin cancer suffers from numerous side effects; for effective therapy, topical application of formulation of paclitaxel (PTX) can be considered as a novel approach.

Objective: The present study is an attempt to prepare formulation of solid lipid nanoparticles (SLN) of PTX for the effective treatment of various form of skin carcinoma.

Methods: The SLN were prepared by high-speed homogenization and ultrasonication method. The prepared SLN were characterized. The optimized PTX SLN were loaded in carbopol gel. The prepared gels were evaluated for its gelling properties and finally studied for in vivo anti-cancer efficacy and histopathological study.

Results: The particle size distribution was found to be in the range of 78.82–587.8?nm. The product yield (%) was found between 60% and 66% and showed a highest entrapment efficiency of 68.3%. The in vitro release of the drug from SLN dispersion was found to be biphasic with the initial burst effect, followed by slow release. SLN-loaded gel were subjected to permeability study and the results show steady-state flux (J_ss), permeability coefficient (K_p), and enhancement ratio were significantly increased in SLN-loaded gel formulation as compared with PTX-loaded gel. The histopathological study clearly reveals the efficacy of the SLN-F3 3G in the treatment of skin cancer.

Conclusion: The experimental formulations show controlled release of PTX and thus expected to show reduce dose-related side effects.     

A survey on fraud and service misuse in voice over IP (VoIP) networks

The migration from circuit-switched networks to packet-switched networks necessitates the investigation of related issues such as service delivery, QoS, security, and service fraud and misuse. The latter can be seen as a combination of accounting and security aspects. In traditional telecommunication networks, fraud accounts for annual losses at an average of 3%–5% of the operators’ revenue and still increasing at a rate of more than 10% yearly. It is also expected that in VoIP networks, the situation will be worse due to the lack of strong built-in security mechanisms, and the use of open standards. This paper discusses the fraud problem in VoIP networks and evaluates the related available solutions.     

Platform‐independent profiling in a virtual execution environment

Virtual execution environments, such as the Java virtual machine, promote platform‐independent software development. However, when it comes to analyzing algorithm complexity and performance bottlenecks, available tools focus on platform‐specific metrics, such as the CPU time consumption on a particular system. Other drawbacks of many prevailing profiling tools are high overhead, significant measurement perturbation, as well as reduced portability of profiling tools, which are often implemented in platform‐dependent native code. This article presents a novel profiling approach, which is entirely based on program transformation techniques, in order to build a profiling data structure that provides calling‐context‐sensitive program execution statistics. We explore the use of platform‐independent profiling metrics in order to make the instrumentation entirely portable and to generate reproducible profiles. We implemented these ideas within a Java‐based profiling tool called JP. A significant novelty is that this tool achieves complete bytecode coverage by statically instrumenting the core runtime libraries and dynamically instrumenting the rest of the code. JP provides a small and flexible API to write customized profiling agents in pure Java, which are periodically activated to process the collected profiling information. Performance measurements point out that, despite the presence of dynamic instrumentation, JP causes significantly less overhead than a prevailing tool for the profiling of Java code. Copyright © 2008 John Wiley & Sons, Ltd.     

Polymorphic bytecode instrumentation

Bytecode instrumentation is a widely used technique to implement aspect weaving and dynamic analyses in virtual machines such as the Java virtual machine. Aspect weavers and other instrumentations are usually developed independently and combining them often requires significant engineering effort, if at all possible. In this article, we present polymorphic bytecode instrumentation(PBI), a simple but effective technique that allows dynamic dispatch amongst several, possibly independent instrumentations. PBI enables complete bytecode coverage, that is, any method with a bytecode representation can be instrumented. We illustrate further benefits of PBI with three case studies. First, we describe how PBI can be used to implement a comprehensive profiler of inter‐procedural and intra‐procedural control flow. Second, we provide an implementation of execution levels for AspectJ, which avoids infinite regression and unwanted interference between aspects. Third, we present a framework for adaptive dynamic analysis, where the analysis to be performed can be changed at runtime by the user. We assess the overhead introduced by PBI and provide thorough performance evaluations of PBI in all three case studies. We show that pure Java profilers like JP2 can, thanks to PBI, produce accurate execution profiles by covering all code, including the core Java libraries. We then demonstrate that PBI‐based execution levels are much faster than control flow pointcuts to avoid interference between aspects and that their efficient integration in a practical aspect language is possible. Finally, we report that PBI enables adaptive dynamic analysis tools that are more reactive to user inputs than existing tools that rely on dynamic aspect‐oriented programming with runtime weaving. These experiments position PBI as a widely applicable and practical approach for combining bytecode instrumentations. © 2015 The Authors. Software: Practice and Experience Published by John Wiley & Sons Ltd.