Cysteine tagging for MS-based proteomics

Amino acid-tagging strategies are widespread in proteomics. Because of the central role of mass spectrometry (MS) as a detection technique in protein sciences, the term "mass tagging" was coined to describe the attachment of a label, which serves MS analysis and/or adds analytical value to the measurements. These so-called mass tags can be used for separation, enrichment, detection, and quantitation of peptides and proteins. In this context, cysteine is a frequent target for modifications because the thiol function can react specifically by nucleophilic substitution or addition. Furthermore, cysteines present natural modifications of biological importance and a low occurrence in the proteome that justify the development of strategies to specifically target them in peptides or proteins. In the present review, the mass-tagging methods directed to cysteine residues are comprehensively discussed, and the advantages and drawbacks of these strategies are addressed. Some concrete applications are given to underline the relevance of cysteine-tagging techniques for MS-based proteomics.     

Computational uncertainty quantification for a clarifier-thickener model with several random perturbations: A hybrid stochastic Galerkin approach

Continuous sedimentation processes in a clarifier-thickener unit can be described by a scalar nonlinear conservation law whose flux density function is discontinuous with respect to the spatial position. In the applications of this model, which include mineral processing and wastewater treatment, the rate and composition of the feed flow cannot be given deterministically. Efficient numerical simulation is required to quantify the effect of uncertainty in these control parameters in terms of the response of the clarifier-thickener system. Thus, the problem at hand is one of uncertainty quantification for nonlinear hyperbolic problems with several random perturbations. The presented hybrid stochastic Galerkin method is devised so as to extend the polynomial chaos approximation by multiresolution discretization in the stochastic space. This approach leads to a deterministic hyperbolic system, which is partially decoupled and therefore suitable for efficient parallelisation. Stochastic adaptivity reduces the computational effort. Several numerical experiments are presented.     

Quantification of six bioactive compounds in Zhenqi Fuzheng preparation by high-performance liquid chromatography coupled with diode array detector and evaporative light scattering detector

A simple and accurate high-performance liquid chromatography (HPLC) coupled with diode array detector (DAD) and evaporative light scattering detector (ELSD) was established for the determination of six...     

Online multi-step prediction for wind speeds and solar irradiation: Evaluation of prediction errors

We propose a general method for predicting multiple steps ahead of our target system and estimating simultaneously the prediction errors in a real time. The requirement of the proposed method is that we have a time series of the target system. We demonstrate the method by artificial data, real wind speed data, and real solar irradiation data.     

Phosphorylation Stoichiometries of Human Eukaryotic Initiation Factors

Eukaryotic translation initiation factors are the principal molecular effectors regulating the process converting nucleic acid to functional protein. Commonly referred to as eIFs (eukaryotic initiation factors), this suite of proteins is comprised of at least 25 individual subunits that function in a coordinated, regulated, manner during mRNA translation. Multiple facets of eIF regulation have yet to be elucidated; however, many of the necessary protein factors are phosphorylated. Herein, we have isolated, identified and quantified phosphosites from eIF2, eIF3, and eIF4G generated from log phase grown HeLa cell lysates. Our investigation is the first study to globally quantify eIF phosphosites and illustrates differences in abundance of phosphorylation between the residues of each factor. Thus, identification of those phosphosites that exhibit either high or low levels of phosphorylation under log phase growing conditions may aid researchers to concentrate their investigative efforts to specific phosphosites that potentially harbor important regulatory mechanisms germane to mRNA translation.     

Degradation rate quantification of solid oxide fuel cell performance with and without Al2TiO5 addition

Degradation rates of electrical current during constant voltage operation of SOFCs with anodes made using NiO precursor powders from two different manufacturers with and without the addition of aluminum titanate (ALT) added by either mechanical mixing or anode infiltration have been quantified using a novel MATLAB algorithm. Because the algorithm has been used to quantify degradation rates for many different SOFC tests, it is thought that the method can be applied to most measured SOFC data to quantify the instantaneous cell degradation rate as a function of time for the entire SOFC performance measurement. Degradation rates determined at different times have been plotted against varying concentrations of ALT addition, facilitating the estimation of optimum ALT concentration for SOFC anodes made with NiO from a specific manufacturer. The algorithm used to determine degradation rates is available upon request to the corresponding author.     

Separation and quantification of olefins and diolefins in cracked petroleum fractions using silver-ion high performance liquid chromatography

A method using normal phase high performance liquid chromatography for the analysis of olefins and diolefins in cracked petroleum samples is proposed and validated in this work. A silver-impregnated silica column is used to separate olefin and diolefin species, resulting in accurate quantification of both group-types. Separations are completed using an isocratic hexane mobile phase, with no sample clean up or backflushing required. Results from the analysis of 11 model compounds are shown, as well as quantification data for four representative samples; figures of merit are also described.