The influence of gas velocity, salt type and concentration on transition concentration for bubble coalescence inhibition and gas holdup

The influence of gas velocity (3.5, 10, and 18 mm/s), salt type (NaCl, NaF, NaBr, NaI and CsCl) and salt concentration (0.001-3 M) on bubble coalescence in a small bubble column were studied. The bubble coalescence was determined by the relative change in the measured light intensities passing through the salt solutions and clean deionised water. It was shown that the transition salt concentration for bubble coalescence inhibition (determined at 50% of bubble coalescence) of all investigated salts decreases with increasing superficial gas velocity. The difference in the transition concentration between NaCl, NaF, NaBr and CsCl does not significantly change with the gas velocity. However that difference between NaI and the other salts significantly decreases with increasing the gas velocity. The gas holdup significantly increases with NaCl, NaF, NaBr and CsCl concentrations but does not significantly change with NaI concentration. These new results imply that the transition salt concentration for bubble coalescence and gas holdup depend not only on the salt properties (i.e. the ion type and their combination) as previously reported, but also on the hydrodynamic conditions.     

Bacterial Catabolism of Biphenyls: Synthesis and Evaluation of Analogues

A series of alkylated 2,3‐dihydroxybiphenyls has been prepared on the gram scale by using an effective Directed ortho Metalation–Suzuki–Miyaura cross‐coupling strategy. These compounds have been used to investigate the substrate specificity of the meta‐cleavage dioxygenase BphC, a key enzyme in the microbial catabolism of biphenyl. Isolation and characterization of the meta‐cleavage products will allow further study of related processes, including the catabolism of lignin‐derived biphenyls.     

European sea bass gill pathology after exposure to cadmium and terbuthylazine: expert versus fractal analysis

The objective of this study was to compare expert versus fractal analysis as new methods to evaluate branchial lamellar pathology in European sea bass Dicentrarchus labrax (Linnaeus, 1758) experimentally exposed to cadmium and to terbuthylazine. In particular, guided expert quantitative and fractal analysis were performed on selected images from semithin sections to test possible differences according to exposure class (unexposed, cadmium exposed, or terbuthylazine exposed) and the discrimination power of the two methods. With respect to guided expert quantitative analysis, the following elementary pathological features were assessed according to pre‐determined cover classes: ‘epithelial lifting’, ‘epithelial shrinkage’, ‘epithelial swelling’, ‘pillar cells coarctation’, ‘pillar cells detachment’, ‘channels fusion’, ‘chloride cells swelling’ and ‘chloride cells invasion’. Considering fractal analysis, D_B (box dimension), D_M (mass dimension), (mean fractal dimension) as fractal dimensions and lacunarity from D_M and scan types were calculated both from the outlined and skeletonized (one pixel wide lines) images. Despite significant differences among experimental classes, only expert analysis provided good discrimination with correct classification of 91.7 % of the original cases, and of 87.5 % of the cross‐validated cases, with a sensitivity of 95.45 % and 91.3 %, respectively, and a specificity of 75 % in both cases. Guided expert quantitative analysis appears to be a reliable method to objectively characterize fish gill pathology and may represent a powerful tool in environmental biomonitoring to ensure proper standardization and reproducibility. Though fractal analysis did not equal the discrimination power of the expert method, it certainly warrants further study to evaluate local variations in complexity or possible multiple scaling rules.     

Site-directed mutagenesis of glyceraldehyde-3-phosphate dehydrogenase reveals the role of residue Ser148

A mutant of Bacillus stearothermophilus D-glyceraldehyde-3-phosphatedehydrogenase, Ser¹⁴⁸ – Ala, was produced byoligonucleotide-directedmutagenesis. The study of the catalytic properties of this mutanthas shown that this mutation significantly affects the Michaelisconstant of inorganic phosphate and to a lesser extent thatof 1,3-diphosphoglycerate and D-glyceraldehyde-3-phosphate.This result is consistent with model-building studies whichshow that, for the phosphorylation step of catalysis, inorganicphosphate must bind to the anion recognition site designatedP_i with the C(3) phosphate of the acyl-enzyme intermediate inthe alternative anion site P_s. Studies of the enantiomeric specificityusing D- and L-glyceraldehyde as substrates show that the hydroxylgroup of Ser¹⁴⁸, combined with the presence of the C(3) phosphateof the substrate, enhances stereospecificity as well as catalysis.However, the stereospecific effect cannot be a consequence ofthe direct interaction of Ser¹⁴⁸ with the C(2)-hydroxyl of thesubstrate. The changed K_m for glyceraldehyde-3-phosphate suggeststhat the initial step of hemithioacetal formation may take placewith its C(3) phosphate bound in the P_i site. This supportsthe molecular mechanism proposed by Moody (1984). Therefore,catalysis could be enhanced through interactions of the serinehydroxyl group not only with inorganic phosphate but also withthe C(3) phosphate of glyceraldehyde-3-phosphate.     

Mapping the Limits of Substrate Specificity of the Adenylation Domain of TycA

The limits and potential of substrate promiscuity of the adenylation domain of tyrocidine synthetase 1 were systematically explored. Substrate acceptance is governed by hydrophobic effects (as shown by the correlation of k_cat/K_M and side‐chain log P), shape complementarity and steric exclusion. The quantification of these factors provides ground rules for understanding and possibly evolving substrate specificity in this class of enzymes.

     

Potential Chemosignals in the Anogenital Gland Secretion of Giant Pandas, <Emphasis Type="Italic">Ailuropoda melanoleuca</Emphasis>, Associated with Sex and Individual Identity

With a combination of dichloromethane extraction and analysis by gas chromatography–mass spectrometry (GC-MS), we found 39 compounds (corresponding to 38 GC peaks) in the anogenital gland secretion (AGS) of captive adult giant pandas, Ailuropoda melanoleuca, during the non-mating season. In addition to indole, squalene, and some of the straight-chain fatty acids that had been characterized previously from the AGS of giant pandas, we identified several new compounds such as decenal, two isomers of decadienal, phenylacetic acid, 5-methylhydantoin, hydroquinone, phenylpropanoic acid, and erucic acid. Quantitative comparison of the relative abundances of the 20 main GC peaks revealed that 5-methylhydantoin, indole, and erucic acid are putative female pheromones, whereas squalene and hydroquinone are putative male pheromones. In addition to the presence of a few individual-specific compounds, the relative abundances of most of the 21 constituents varied more among individuals than within individuals. This suggests that individual identity might be coded in both digital and analog form. The chemical composition of different AGS samples from the same pandas consistently displayed a minimum cluster distance, much smaller than that between samples from different individuals in a hierarchical linkage cluster (average linkage) dendrogram. Our results indicate that the AGS might contain an “odor fingerprint.” Although putative sex pheromones such as squalene and erucic acid should be assessed further by bioassay, our study suggests that synthetic chemosignals might be useful in modulating the behavior and physiology of giant pandas.     

Ligand-directed immobilization of proteins through an esterase 2 fusion tag studied by atomic force microscopy

Atomically flat mica surfaces were chemically modified with an alkyl trifluoromethyl ketone, a covalent inhibitor of esterase 2 from Alicyclobacillus acidocaldarius, which served as a tag for ligand-directed immobilization of esterase-linked proteins. Purified NADH oxidase from Thermus thermophilus and human exportin-t from cell lysates were anchored on the modified surfaces. The immobilization effectiveness of the proteins was studied by atomic force microscopy (AFM). It was shown that ligand-esterase interaction allowed specific attachment of exportin-t and resulted in high-resolution images and coverage patterns that were comparable with immobilized purified protein. Moreover, the biological functionality of immobilized human exportin-t in forming a quaternary complex with tRNA and the GTPase Ran-GTP, and the dimension changes before and after complex formation were also determined by AFM.     

C-terminal His-tagging results in substrate specificity changes of the thioesterase I from Escherichia coli

The biochemical properties of Escherichia coli thioesterase I, His-tagged (HT) on the C-terminal, were systematically analyzed and compared with that without the His-tag (WT). These two types of enzymes exhibit similar optimal temperature and pH dependence, but subtle differences were detected. Kinetic studies revealed that the k _car/JK _m values of the HT enzyme for the substrates palmitoyl-CoA and p-nitrophenyl dodecanoate were 36- and 10-fold lower than those of the WT, respectively. In contrast, HT had a fivefold increased catalytic efficiency for p-nitrophenyl acetate, and up to fourfold increases toward phenylalanine- and tyrosine-derived ester substrates, l-NBPNPE (N-carbobenzoxy-l-phenylalanine p-nitrophenyl ester) and l-NBTNPE (N-carbobenzoxyl-l-tyrosine p-nitrophenyl ester), respectively. For l-NBPNPE and l-NBTNPE, the increases were attributed to the higher k _cat values with little changes in K _m, whereas the increase for p-nitrophenyl acetate was mainly attributed to the lower K _m value. It is concluded that addition of six hydrophilic histidine residues on the C-terminus resulted in a change in substrate specificity of E. coli thioesterase I toward more hydrophilic substrates.     

铜及铜合金作为免疫和抗菌元素的综述（英文）

讨论铜与人、细菌之间的关系。铜在人体免疫中发挥重要作用。在推荐摄入量下,铜可以增强人体的免疫防御反应。本文主要讨论铜的抗菌活性和抗菌机制。结论表明,铜的抗菌活性受细菌中铜稳态机制、粘附、湿度、菌株特异性以及抗菌剂制备方法的影响。对于颗粒抗菌和表面抗菌材料,讨论几种制备方法,如溶胶-凝胶法、冷喷涂法和生物合成法,分别属于化学合成、物理合成和生物合成法。溶胶-凝胶法有助于颗粒抗菌和表面抗菌材料的制备;冷喷涂技术可以应用于表面抗菌铜的合成;生物合成是一种可应用于纳米颗粒抗菌剂制备的新技术。     

Structure Determination of the Top‐Loop of the Conserved 3′‐Terminal Secondary Structure in the Genome of Flaviviruses

To what extent small differences in RNA sequences (mutations) can have a profound impact on biology remains an intriguing question. This effect can be studied by using untranslated RNA regions as a model. We have studied the influence of mutations on the structure of an RNA hairpin that occurs in the 3′‐untranslated region (UTR) of Flaviviridae, and is known to have a large impact on the vector dependency of flaviviruses. Three related RNA sequences were studied by NMR spectroscopy. The selected sequences represent each one of the three clusters in the flavivirus genes (mosquito‐borne, tick‐borne, and no‐known‐vector viruses). A new strategy was used to obtain chemical shift signatures of carbonyl atoms in unlabeled uridine nucleobases to characterize their involvement in hydrogen bonding. Clear differences occur in the structures and stacking pattern of the three RNA hairpins. The observed differences cannot be predicted based on sequence analysis. A different biology can be correlated with a different RNA tertiary structure. The underlying biological mechanism, however, remains to be studied.