The 9p21 region in bladder cancer cell lines: large homozygous deletion inactivate the CDKN2, CDKN2B and MTAP genes

Homozygous and hemizygous deletions of 9p21 are the earliest and most common genetic alteration in bladder cancer. The identification of two cell cycle regulators, CDKN2 and CDKN2B, that map to the common region of deletion has prompted the hypothesis that they are critical tumor suppressor genes in this malignancy. However, controversy as to whether these genes are the only or even the most important target in bladder cancer oncogenesis remains. To more clearly determine the effect of these 9p21 alterations, we mapped the homozygous deletions and performed a detailed mutational and expression analysis for CDKN2, CDKN2B and a closely linked gene, methylthioadenoside phosphorylase (MTAP), in 16 established bladder cancer cell lines. Nine of the 16 lines exhibit large (30 to > 2000 kb) homozygous deletions on 9p21. All deletions include at least one exon of CDKN2, eight of nine include CDKN2B, and six of nine include MTAP. MTAP function correlates with the genomic deletions. SSCP and sequence analysis does not reveal any inactivating point mutations of CDKN2 or of CDKN2B in any of the cell lines without homozygous deletions, and all express the CDKN2 and the CDKN2B mRNA as well as the encoded p16 protein. The p16 protein levels vary widely and are correlated with absent pRb expression. We conclude that the 9p21 deletions in bladder cancer usually inactivate the CDKN2. CDKN2B, and MTAP genes but that CDKN2 is the most common target. Other mechanisms for inactivating this gene in bladder cancer appear to be uncommon.     

The next-generation business meeting: from i-lands to flexible meeting landscapes

Meetings are an important form of interaction in business settings. However, meetings are often not held in a way that makes all participants feel engaged. Meeting support systems try to overcome this obstacle by helping meeting participants in the meeting workflow. This paper takes a complementary approach by distinguishing between different perspectives of good meetings: the peopleware perspective, the generic groupware perspective, and the roomware perspective. It is argued that all these perspectives have to be considered simultaneously when heading toward an ideal meeting system design. The paper presents excerpts of a pattern language that empowers users to improve their meeting. Besides this, the pattern language can be considered as a tool for the designer. After showing, how both groups made use of the patterns, the paper finally presents LivingAgendas, a meeting support system that can accompany the meeting participant through the meeting life cycle.     

List-based Data Structures for Efficient Management of Advance Reservations

Complex eScience and other sophisticated applications in the field of HPC imply new demands that queuing based resource management systems cannot meet. To guarantee Quality of Service and co-allocation in the Grid, planning based resource management systems implementing advance reservation are needed. These systems face new challenges as a planning based management system has to keep track of the jobs and reservations in the future. Additionally, during the negotiation process of incoming reservations, a good overview of the remaining, not-yet reserved capacity is needed—not only for the current allocation, but also for the whole book-ahead time. Therefore, the resource management problem becomes a two dimensional problem for advance reservations in this field. In this paper different data structures are investigated and discussed in order to fit to planning based resource management. As a result the benefits of using lists of resource allocation or free blocks are exposed. This general idea widely used to manage continuous resources is extended to cover not only the resource dimension but also the time dimension. The list of blocks approach is evaluated in a Grid level and a local resource management system for a computing cluster. The extensive simulations showed a better runtime and higher reservation success rate compared with the currently favored approach of a slotted time and the more sophisticated approach based on AVL trees.     

Hydrogen evolution during the oxidation of formaldehyde on Au:: The influence of single crystal structure and Tl-upd

Hydrogen evolution during formaldehyde oxidation in alkaline solution has been monitored by Differential Electrochemical Mass Spectrometry on Au(111) and polycrystalline gold. The current efficiency for hydrogen evolution increases with higher concentration and is in the same range on both, polycrystalline Au and Au(111) electrode. The onset potentials and half-wave potentials are higher on Au(111). Reaction orders for the faradaic current on the bare gold electrodes have been determined as 0.21 for higher and 0.76 for lower concentrations. Reaction orders for hydrogen evolution during formaldehyde oxidation are 1.4 times higher in each case. Tafel slopes in the range of 140-160 mV are found. This signifies that the first reaction step involving the formation of adsorbed hydrogen is largely determining the overall reaction rate. In the presence of thallium adlayers hydrogen evolution from formaldehyde oxidation is largely suppressed. On the thallium modified polycrystalline Au, formaldehyde oxidation is shifted for 100 mV to higher potentials where Tl is partially desorbed and hydroxide is coadsorbed on the modified surface. On thallium modified Au(111), a similar process takes place, but in the same potential region as the onset of formaldehyde oxidation on the bare surface and therefore the formaldehyde oxidation is only slightly shifted. Tafel slopes are decreased to 80 mV/dec in the presence of thallium. In the presence of adsorbed thallium, the first reaction step is in equilibrium, the coverage with adsorbed hydrogen is smaller and its recombination to H₂ is largely suppressed.     

Smallholders’ Soil Fertility Management in the Central Highlands of Ethiopia: Implications for Nutrient Stocks, Balances and Sustainability of Agroecosystems

Low agricultural productivity caused by soil degradation is a serious problem in the Ethiopian Highlands. Here, we report how differences in soil fertility management between farming systems, based either on enset (Ensete ventricosum) or on teff (Eragrostis tef) as the major crops, affect the extent of nutrient stocks, balances and ecosystem sustainability. We collected information on farmers’ resources and nutrient management practices from stratified randomly selected households in two watersheds in the Central Highlands of Ethiopia. In addition, we collected soil samples from each land use and calculated nutrient stocks, partial and full nutrient balances (N, P and K) for one cropping season. Our results show that farmers in the two farming systems manage their soils differently and that nutrient inputs were positively related to farmers’ wealth status. The watershed with the enset-based system had higher soil N and K stocks than the watershed with the teff-based system, while P stocks were not different. Management related N?and K fluxes were more negative in the teff-based system (?28 kg N ha^?1 yr^?1 and ?34 kg K ha^?1 yr^?1) than in the enset-based system (?6 kg N ha^?1 yr^?1 and ?14 kg K ha^?1 yr^?1) while P fluxes were almost neutral or slightly positive. Within the enset-based system, a strong redistribution of N, P and K took place from the meadows and cereals (negative balance) to enset (positive balances). Although in the teff-based system, N, P and K were redistributed from meadows, small cereals and pulses to maize, the latter still showed a negative nutrient balance. In contrast to nutrient balances at land use level, nutrient balances at the watershed scale masked contrasting areas within the system where nutrient oversupply and deficiencies occurred.     

Light metal compound casting

‘Compound casting’simplifies joining processes by directly casting a metallic melt onto a solid metal substrate. A continuously metallurgic transition is very important for industrial applications, such as joint structures of spaceframe constructions in transport industry. In this project, ‘compound casting’ of light metals is investigated, aiming at weight-saving. The substrate used is a wrought aluminium alloy of type AA5xxx, containing magnesium as main alloying element. The melts are aluminium alloys, containing various alloying elements (Cu, Si, Zn), and magnesium. By replacing the natural oxygen layer with a zinc layer, the inherent wetting difficulties were avoided, and compounds with flawless interfaces were successfully produced (no contraction defects, cracks or oxides). Electron microscopy and EDX investigations as well as optical micrographs of the interfacial areas revealed their continu- ously metallic constitution. Diffusion of alloying elements leads to heat-treatable microstructures in the vicinity of the joining interfaces in Al-Al couples. This permits significant variability of mechanical properties. Without significantly cutting down on wettability, the formation of low-melting intermetallic phases (Al3Mg2 and Al12Mg17 IMPs) at the interface of Al-Mg couples was avoided by applying a protective coating to the substrate.     

Precise selective deposition of microparticles on electrodes of microelectronic chips

We examined the high precision deposition of toner and polymer microparticles with a typical size of approximately 10 microm on electrode arrays with electrodes of 100 microm and below using custom-made microelectronic chips. Selective desorption of redundant particles was employed to obtain a given particle pattern from preadsorbed particle layers. Microparticle desorption was regulated by dielectrophoretic attracting forces generated by individual pixel electrodes, tangential detaching forces of an air flow, and adhesion forces on the microchip surface. A theoretical consideration of the acting forces showed that without pixel voltage, the tangential force applied for particle detachment exceeded the particle adhesion force. When the pixel voltage was switched on, however, the sum of attracting forces was larger than the tangential detaching force, which was crucial for desorption efficiency. In our experiments, appropriately large dielectrophoretic forces were achieved by applying high voltages of up to 100 V on the pixel electrodes. In addition, electrode geometries on the chip's surface as well as particle size influenced the desorption quality. We further demonstrated the compatibility of this procedure to complementary metal oxide semiconductor chip technology, which should allow for an easy technical implementation with respect to high-resolution microparticle deposition.     

Exploration of channel width scaling and edge states in transition metal dichalcogenides

We explore the impact of edge states in three types of transition metal dichalcogenides (TMDs), namely metallic Td-phase WTe₂ and semiconducting 2H-phase MoTe₂ and MoS₂, by patterning thin flakes into ribbons with varying channel widths. No obvious charge depletion at the edges is observed for any of these three materials, in contrast to observations made for graphene nanoribbon devices. The semiconducting ribbons are characterized in a three-terminal field-effect transistor (FET) geometry. In addition, two ribbon array designs have been carefully investigated and found to exhibit current levels higher than those observed for conventional one-channel devices. Our results suggest that device structures incorporating a high number of edges can improve the performance of TMD FETs. This improvement is attributed to a higher local electric field, resulting from the edges, increasing the effective number of charge carriers, and the absence of any detrimental edge-related scattering.

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Model predictive control of a rotary cement kiln

A first principles model of a cement kiln is used to control and optimize the burning of clinker in the cement production process. The model considers heat transfer between a gas and a feed state via convection and radiation. Furthermore, it contains effects such as chemical reactions, feed transport, energy losses and energy input. A model predictive controller is used to stabilize a temperature profile along the rotary kiln, guarantee good combustion conditions and maximize production. Moving horizon estimation was used for online estimation of selected model parameters and unmeasured states. Results from the pilot site are presented.     

Workload characterization of JVM languages

Originally developed with a single language in mind, the JVM is now targeted by numerous programming languages—its automatic memory management, just‐in‐time compilation, and adaptive optimizations—making it an attractive execution platform. However, the garbage collector, the just‐in‐time compiler, and other optimizations and heuristics were designed primarily with the performance of Java programs in mind. Consequently, many of the languages targeting the JVM, and especially the dynamically typed languages, are suffering from performance problems that cannot be simply solved at the JVM side. In this article, we aim to contribute to the understanding of the character of the workloads imposed on the JVM by both dynamically typed and statically typed JVM languages. To this end, we introduce a new set of dynamic metrics for workload characterization, along with an easy‐to‐use toolchain to collect the metrics. We apply the toolchain to applications written in six JVM languages (Java, Scala, Clojure, Jython, JRuby, and JavaScript) and discuss the findings. Given the recently identified importance of inlining for the performance of Scala programs, we also analyze the inlining behavior of the HotSpot JVM when executing bytecode originating from different JVM languages. As a result, we identify several traits in the non‐Java workloads that represent potential opportunities for optimization. © 2015 The Authors. Software: Practice and Experience Published by John Wiley & Sons Ltd.