A pattern recognition-based approach for phylogenetic network construction with constrained recombination

The tree representation of evolutionary relationship oversimplifies the view of the process of evolution as it cannot take into account the events such as horizontal gene transfer, hybridization, homoplasy and genetic recombination. Several algorithms exist for constructing phylogenetic networks which result from events such as horizontal gene transfer, hybridization and homoplasy. Very little work has been published on the algorithmic detail of phylogenetic networks with constrained recombination. The problem of minimizing the number of recombinations in a phylogenetic network, constructed using binary DNA sequences, is NP-hard. In this paper, we propose a pattern recognition-based O(n²) time approach for constructing the phylogenetic network, where n is the number of nodes or sequences in the input data. The network is constructed with the restriction that no two cycles in the network share a common node.     

Thermal stability in bulk cryomilled ultrafine-grained 5083 Al alloy

Thermal stability in bulk ultrafine-grained (UFG) 5083 Al that was processed by gas atomization followed by cryomilling, consolidation, and extrusion, and that exhibited an average grain size of 305 nm, was investigated in the temperature range of 473 to 673 K (0.55 to 0.79 T _m , where T _m is the melting temperature of the material) for different annealing times. Appreciable grain growth was observed at temperatures > 573 K, whereas there was limited grain growth at temperatures < 573 K even after long annealing times. The values of the grain growth exponent, n, deduced from the grain growth data were higher than the value of 2 predicted from elementary grain growth theories. The discrepancy was attributed to the operation of strong pinning forces on boundaries during the annealing treatment. An examination of the microstructure of the alloy suggests that the origin of the pinning forces is most likely related to the presence of dispersion particles, which are mostly introduced during cryomilling. Two-grain growth regimes were identified: the low-temperature region (<573 K) and the high-temperature region (>573 K). For temperatures lower than 573 K, the activation energy of 25 ± 5 kJ/mol was determined. It is suggested that this low activation energy represents the energy for the reordering of grain boundaries in the UFG material. For temperatures higher than 573 K, an activation energy of 124 ± 5 kJ/mol was measured. This value of activation energy, 124 ± 5 kJ/mol, lies between that for grain boundary diffusion and lattice diffusion in analogous aluminum polycrystalline systems. The results show that the strength and ductility of bulk UFG 5083 Al, as obtained from tensile tests, correlate well with substructural changes introduced in the alloy by the annealing treatment.     

Preparation and properties of poly(ethylene oxide) star polymers

Poly(ethylene oxide) (PEO) star polymers were prepared by anionic polymerization of methacryloyl chloride and glyceryl trimethacrylate with sec‐butyllithium in cyclohexane. The ensuing polymers were grafted with poly(ethylene glycol) of molecular weight 400. The final product was washed with methylene chloride and analyzed with infrared spectroscopy, differential scanning calorimetry, and thermogravimetry. Star polymers of PEO were also prepared by anionic polymerization of glycidol with sec‐butyllithium in cyclohexane. The initiator was chosen so as to yield a polymer of 10,000 molecular weight. The resulting polymers were analyzed by nuclear magnetic resonance, infrared spectroscopy, and thermogravimetry. © 2002 Wiley Periodicals, Inc. J Appl Polym Sci 87: 322–327, 2003     

An EKV-based high voltage MOSFET model with improved mobility and drift model

An EKV-based high voltage MOSFET model is presented. The intrinsic channel model is derived based on the charge based EKV-formalism. An improved mobility model is used for the modeling of the intrinsic channel to improve the DC characteristics. The model uses second order dependence on the gate bias and an extra parameter for the smoothening of the saturation voltage of the intrinsic drain. An improved drift model [Chauhan YS, Anghel C, Krummenacher F, Ionescu AM, Declercq M, Gillon R, et al. A highly scalable high voltage MOSFET model. In: IEEE European solid-state device research conference (ESSDERC), September 2006. p. 270–3; Chauhan YS, Anghel C, Krummenacher F, Maier C, Gillon R, Bakeroot B, et al. Scalable general high voltage MOSFET model including quasi-saturation and self-heating effect. Solid State Electron 2006;50(11–12):1801–13] is used for the modeling of the drift region, which gives smoother transition on output characteristics and also models well the quasi-saturation region of high voltage MOSFETs. First, the model is validated on the numerical device simulation of the VDMOS transistor and then, on the measured characteristics of the SOI-LDMOS transistor. The accuracy of the model is better than our previous model [Chauhan YS, Anghel C, Krummenacher F, Maier C, Gillon R, Bakeroot B, et al. Scalable general high voltage MOSFET model including quasi-saturation and self-heating effect. Solid State Electron 2006;50(11–12):1801–13] especially in the quasi-saturation region of output characteristics.     

Efficient compression and network adaptive video coding for distributed video surveillance

The availability of cheap network based video cameras and the prevalence of wireless networks has lead to a major thrust towards deployment of large scale Distributed Video Surveillance (DVS) systems. This has opened up an important area of research to deal with the issues involved in DVS system for efficient collection and transmission of large scale video streams from the cameras at the guarded sites, to the end users in possibly constrained network conditions. In this paper, we propose a framework based on content-based video classification and scalable compression scheme to provide a robust bandwidth efficient video transmission for DVS. The scheme builds on a Discrete Wavelet Transform (DWT) based Color-Set Partitioning for Hierarchical Trees (CSPIHT) coding to obtain a scalable bitstream. Wavelet domain segmentation and compression assists in development of a DVS architecture. The architecture includes a novel module for dynamic allocation of Network bandwidth based on the current available resources and constraints. Different frame constituents are optimally coded based on their relative significance, perceptual quality, and available estimate of network bandwidth. Experimental result over different video sequences and simulations for Network conditions demonstrate the efficient performance of the approach.     

OS-Guard: on-site signature based framework for multimedia surveillance data management

This paper presents OS-Guard(On-Site Guard), a novel on-site signature based framework for multimedia surveillance data management. One of the major concerns in widespread deployment of multimedia surveillance systems is the enormous amount of data collected from multiple media streams that need to be communicated, observed and stored for crime alerts and forensic analysis. This necessitates investigating efficient data management techniques to solve this problem. This work aims to tackle this problem, motivated by the following observation, more data does not mean more information. OS-Guard is a novel framework that attempts to collect informative data and filter out non-informative data on-site, thus taking a step towards solving the data management problem. In the framework, both audio and video cues are utilized by extracting features from the incoming data stream and the resultant real valued feature data is binarized for efficient storage and processing. A feature selection process based on association rule mining selects discriminant features. A short representative sample of the whole database is generated using a novel reservoir sampling algorithm that is stored onsite and used with an support vector machine to classify an important event. Initial experiments for a Bank ATM monitoring scenario demonstrates promising results.     

Methacrylic acid and dodecyl methacrylate (MAc‐DMA) hydrogel for enhanced catalytic activity of lipase of Bacillus coagulans MTCC‐6375

An alkaline thermotolerant bacterial lipase of Bacillus coagulans MTCC‐6375 was purified and immobilized on a methacrylic acid and dodecyl methacrylate (MAc‐DMA) hydrogel. The lipase was optimally bound to the matrix after 20 min of incubation at 55°C and pH 9 under shaking conditions. The matrix‐bound lipase retained approximately 50% of its initial activity at 70–80°C after 3 h of incubation. The immobilized lipase was highly active on medium chain length p‐nitrophenyl acyl ester (C: 8, p‐nitrophenyl caprylate) than other p‐nitrophenyl acyl esters. The presence of Fe³⁺, NH₄⁺, K⁺, and Zn²⁺ ions at 1 mM concentration in the reaction mixture resulted in a profound increase in the activity of immobilized lipase. Most of the detergents partially reduced the activity of the immobilized lipase. The immobilized lipase performed ～62% conversion in 12 h at temperature 55°C. © 2006 Wiley Periodicals, Inc. J Appl Polym Sci 100: 1420–1426, 2006     

2-DOF vibratory gyroscope fabricated by SU-8 based UV-LIGA process

This paper reports fabrication of 2-DOF vibratory gyroscope using SU-8 based UV-LIGA process. The device structure is designed to be symmetrical in order to match the resonance frequencies of drive and sense mode oscillators and also to minimize their relative temperature dependent drift. The overall arrangement is such that the two vibration modes do not affect each other and therefore, mechanical decoupling is achieved which helps in minimizing bias drift. The design is optimized to be compatible with the UV-LIGA process having 10 μm thick electroformed nickel as structural layer. Photolithography to create 11 μm thick SU-8 molds for electroforming sacrificial copper and structural nickel layer is optimized using multiple exposure technique that ensures near vertical side walls. Since the highly cross-linked SU-8 remaining after development is difficult to remove reliably from high aspect ratio structures without damage or alteration to the electroformed metals, a 2.45 GHz MW plasma etching process is developed with CF₄/O₂ mixes. The fabricated device is checked for off-plane misalignment between the stationary and movable comb fingers using white light interferometry and it is found to be almost negligible. Also, the prototype device is characterized for amplitude and phase spectral responses using Polytec MSA-500 Micro System Analyzer. The drive and sense mode resonance frequencies are observed at 7.3 and 7.1 kHz respectively against the mode matched designed frequency of 7.5 kHz.