Genetic and Epigenomic Modifiers of Diabetic Neuropathy

Diabetic neuropathy (DN), the most common chronic and progressive complication of diabetes mellitus (DM), strongly affects patients’ quality of life. DN could be present as peripheral, autonomous or, clinically also relevant, uremic neuropathy. The etiopathogenesis of DN is multifactorial, and genetic components play a role both in its occurrence and clinical course. A number of gene polymorphisms in candidate genes have been assessed as susceptibility factors for DN, and most of them are linked to mechanisms such as reactive oxygen species production, neurovascular impairments and modified protein glycosylation, as well as immunomodulation and inflammation. Different epigenomic mechanisms such as DNA methylation, histone modifications and non-coding RNA action have been studied in DN, which also underline the importance of “metabolic memory” in DN appearance and progression. In this review, we summarize most of the relevant data in the field of genetics and epigenomics of DN, hoping they will become significant for diagnosis, therapy and prevention of DN.     

Circuits and techniques for high-resolution measurement of on-chip power supply noise

This paper presents a technique for characterizing the statistical properties and spectrum of power supply noise using only two on-chip low-throughput samplers. The samplers utilize a voltage-controlled oscillator to perform high-resolution analog-to-digital conversion with minimal hardware. The measurement system is implemented in a 0.13-/spl mu/m process along with a high-speed link transceiver. Measured results from this chip validate the accuracy of the measurement system and elucidate several aspects of power supply noise, including its cyclostationary nature.     

Finite element modelling of skeletal muscles coupled with fatigue

In this study, Hill's muscle theory coupled with fatigue was proposed to describe mechanical behaviours of skeletal muscles. The force developed by a fatigued muscle was described by a muscle fatigue formula which was a time function of the activation α_a and the stretch λ. The modified Hill's muscle theory was hence incorporated into a three-dimensional (3D) finite element model using the PAK finite element code. In this paper, the theoretical derivation of the 3D muscle model was firstly described. After presenting the method of establishing the finite element programme, a case example of studying the mechanical response of a frog gastrocnemius muscle was used to illustrate the applicability of the proposed methodology. The effects of the muscle fatigue on the deformation as well as the stress and strain distribution of the frog muscle subject to a cyclic activation function have been determined. An experiment capturing the real-time shape change of a frog muscle was also conducted to assess the applicability of the proposed method. A comparison between the deformed shapes of the predictive model and the frog muscles was also made. It was shown that the method is capable of providing a reasonable model for describing the mechanical behaviour of skeletal muscles.     

Bead-based polymerase chain reaction on a microchip

We present a bead-based approach to microfluidic polymerase chain reaction (PCR), enabling fluorescent detection and sample conditioning in a single microchamber. Bead-based PCR, while not extensively investigated in microchip format, has been used in a variety of bioanalytical applications in recent years. We leverage the ability of bead-based PCR to accumulate fluorescent labels following DNA amplification to explore a novel DNA detection scheme on a microchip. The microchip uses an integrated microheater and temperature sensor for rapid control of thermal cycling temperatures, while the sample is held in a microchamber fabricated from (poly)dimethylsiloxane and coated with Parylene. The effects of key bead-based PCR parameters, including annealing temperature and concentration of microbeads in the reaction mixture, are studied to achieve optimized device sensitivity and detection time. The device is capable of detecting a synthetically prepared section of the Bordetella pertussis genome in as few as 10 temperature cycles with times as short as 15?min. We then demonstrate the use of the procedure in an integrated device; capturing, amplifying, detecting, and purifying template DNA in a single microfluidic chamber. These results show that this method is an effective method of DNA detection which is easily integrated in a microfluidic device to perform additional steps such as sample pre-conditioning.     

Robust Kalman filtering for nonlinear multivariable stochastic systems in the presence of non‐Gaussian noise

The presence of outliers can considerably degrade the performance of linear recursive algorithms based on the assumptions that measurements have a Gaussian distribution. Namely, in measurements there are rare, inconsistent observations with the largest part of population of observations (outliers). Therefore, synthesis of robust algorithms is of primary interest. The Masreliez–Martin filter is used as a natural frame for realization of the state estimation algorithm of linear systems. Improvement of performances and practical values of the Masreliez‐Martin filter as well as the tendency to expand its application to nonlinear systems represent motives to design the modified extended Masreliez–Martin filter. The behaviour of the new approach to nonlinear filtering, in the case when measurements have non‐Gaussian distributions, is illustrated by intensive simulations. Copyright © 2015 John Wiley & Sons, Ltd.     

Application of ionic liquids for the removal of heavy metals from wastewater and activated sludge

This paper presents the results of adsorption studies on the removal of heavy metals (Cr, Cu, Cd, Ni, Pb and Zn) from standard solutions, real wastewater samples and activated sewage sludge using a new technique of liquid-liquid extraction using quaternary ammonium and phosphonium ionic liquids (ILs). Batch sorption experiments were conducted using the ILs [PR4][TS], [PR4][MTBA], [A336][TS] and [A336][MTBA]. Removal of these heavy metals from standard solutions were not effective, however removal of heavy metals from the industrial effluents/wastewater treatment plants were satisfactory, indicating that the removal depends mainly on the composition of the wastewater and cannot be predicted with standard solutions. Removal of heavy metals from activated sludge proved to be more successful than conventional methods such as incineration, acid extraction, thermal treatment, etc. For the heavy metals Cu, Ni and Zn, ≥90% removal was achieved.     

Analysis of medications change in Parkinson’s disease progression data

Parkinson’s disease is a neurodegenerative disorder that affects people worldwide. Careful management of patient’s condition is crucial to ensure the patient’s independence and quality of life. This is achieved by personalized treatment based on individual patient’s symptoms and medical history. The aim of this study is to determine patient groups with similar disease progression patterns coupled with patterns of medications change that lead to the improvement or decline of patients’ quality of life symptoms. To this end, this paper proposes a new methodology for clustering of short time series of patients’ symptoms and prescribed medications data, and time sequence data analysis using skip-grams to monitor disease progression. The results demonstrate that motor and autonomic symptoms are the most informative for evaluating the quality of life of Parkinson’s disease patients. We show that Parkinson’s disease patients can be divided into clusters ordered in accordance with the severity of their symptoms. By following the evolution of symptoms for each patient separately, we were able to determine patterns of medications change which can lead to the improvement or worsening of the patients’ quality of life.     

Electrospun Poly(styrene) Fibers as a Protection for the First- and the Second-Generation Grubbs’ Catalyst

The study presents a novel method for protection of the first- and the second-generation Grubbs’ catalyst, by incorporation in poly(styrene) fibers through electrospinning technique. Both catalysts are sensitive to the presence of the amine hardeners in the epoxy-based self-healing composites and require protection from deactivation to retain their ability to promote polymerization reaction of the healing agent. Comparison of healing efficiencies of both catalysts suggested that poly(styrene) fibers offer better protection and dispersion for the first-generation Grubbs’ catalyst, although all the samples exhibited high-healing efficiency. Difference in stereoselectivity between two catalysts was also indicated.     

Determination of 200 °C Isothermal Section of Al-Ag-Ga Phase Diagram by Microanalysis,X-ray Diffraction,Hardness and Electrical Conductivity Measurements

Ternary Al-Ag-Ga system at 200 °C was experimentally and thermodynamically assessed. Isothermal section was extrapolated using optimized thermodynamic parameters for constitutive binary systems. Microstructure and phase composition of the selected alloy samples were analyzed using light microscopy, scanning electron microscopy combined with energy-dispersive spectrometry and x-ray powder diffraction technique. The obtained experimental results were found to be in a close agreement with the predicted phase equilibria. Hardness and electrical conductivity of the alloy samples from four vertical sections Al-Ag₈₀Ga₂₀, Al-Ag₆₀Ga₄₀, Ag-Al₈₀Ga₂₀ and Ag-Al₆₀Ga₄₀ of the ternary Al-Ag-Ga system at 200 °C were experimentally determined using Brinell method and eddy current measurements. Additionally, hardness of the individual phases present in the microstructure of the studied alloy samples was determined using Vickers microhardness test. Based on experimentally obtained results, isolines of Brinell hardness and electrical conductivity were calculated for the alloys from isothermal section of the ternary Al-Ag-Ga system at 200 °C.