All well if starts well? Citation infancy of recently launched chemistry journals

The impact factor and the journal self-citation rate of 22 newly launched chemistry journals has been investigated. The dependence of these indicators on the journal's age was found to be rather characteristic to the initial period of a journal's life cycle.     

Primary Founder Mutations in the PRKDC Gene Increase Tumor Mutation Load in Colorectal Cancer

The clonal composition of a malignant tumor strongly depends on cellular dynamics influenced by the asynchronized loss of DNA repair mechanisms. Here, our aim was to identify founder mutations leading to subsequent boosts in mutation load. The overall mutation burden in 591 colorectal cancer tumors was analyzed, including the mutation status of DNA-repair genes. The number of mutations was first determined across all patients and the proportion of genes having mutation in each percentile was ranked. Early mutations in DNA repair genes preceding a mutational expansion were designated as founder mutations. Survival analysis for gene expression was performed using microarray data with available relapse-free survival. Of the 180 genes involved in DNA repair, the top five founder mutations were in PRKDC (n = 31), ATM (n = 26), POLE (n = 18), SRCAP (n = 18), and BRCA2 (n = 15). PRKDC expression was 6.4-fold higher in tumors compared to normal samples, and higher expression led to longer relapse-free survival in 1211 patients (HR = 0.72, p = 4.4 × 10⁻³). In an experimental setting, the mutational load resulting from UV radiation combined with inhibition of PRKDC was analyzed. Upon treatments, the mutational load exposed a significant two-fold increase. Our results suggest PRKDC as a new key gene driving tumor heterogeneity.     

Interactions and Chemical Transformations of Coronene Inside and Outside Carbon Nanotubes

By exposing flat and curved carbon surfaces to coronene, a variety of van der Waals hybrid heterostructures are prepared, including coronene encapsulated in carbon nanotubes, and coronene and dicoronylene adsorbed on nanotubes or graphite via π–π interactions. The structure of the final product is determined by the temperature of the experiment and the curvature of the carbon surface. While at temperatures below and close to the sublimation point of coronene, nanotubes with suitable diameters are filled with single coronene molecules, at higher temperatures additional dimerization and oligomerization of coronene occurs on the surface of carbon nanotubes. The fact that dicoronylene and possible higher oligomers are formed at lower temperatures than expected for vapor‐phase polymerization indicates the active role of the carbon surface used primarily as template. Removal of adsorbed species from the nanotube surface is of utmost importance for reliable characterization of encapsulated molecules: it is demonstrated that the green fluorescence attributed previously to encapsulated coronene is instead caused by dicoronylene adsorbed on the surface which can be solubilized and removed using surfactants. After removing most of the adsorbed layer, a combination of Raman spectroscopy and transmission electron microscopy was employed to follow the transformation dynamics of coronene molecules inside nanotubes.     

Antimicrobial functionalization of Ca alginate-coconut oil latent heat storing microcapsules by Ag nanoparticles

Latent heat storage by phase change materials (PCM) is a promising way of thermal energy storage for equilibrating the daily fluctuation of temperature in office- and home buildings. Bio-originated compounds have got great importance to evade further plastic contamination all over the world. Durability of biodegradable natural materials by means of environmentally friendly agents is an exciting challenge. In this study Ca alginate-coconut oil eco-friendly core-shell PCM microcapsules were functionalized with Ag nanoparticles, following their synthesis using harmless reducing agents. Throughout the preparation of the PCM microcapsules by repeated interfacial coacervation/crosslinking procedure, the Ag nanoparticles were homogeneously dispersed in the Ca alginate shell. High coconut oil content was achieved in the Ag nanoparticle-loaded microcapsules, which was not influenced by the Ag nanoparticle content. The high PCM content resulted in correspondingly high latent heat storing capability. The freezing and melting heat storing capacities were in the range of 83.6 and 85.6 J/g, as well as 89.7 to 92.6 J/g, respectively, matching to the extremely high PCM content in the range of 82.7% to 84.8% (m/m). Leaking of the heat storing microcapsules was not observed after 200 heating-cooling cycles. The Ag nanoparticle content did not influence the PCM ratio of the microcapsules, although as expected their antimicrobial potential was significantly enhanced by it. The highest Ag nanoparticle loading, that was 1.3% (m/m) related to the total mass of microcapsules, exerted excellent antibacterial and antifungal impact.     

Plastic waste minimization: Compatibilization of polypropylene/polyamide 6 blends by polyalkenyl‐poly‐maleic‐anhydride‐based agents

The present article discloses the properties improvement in PP/PA 6 blends by new type experimental coupling additives. By the experimental agents especially the tensile properties could be improved. For example, the tensile strength and the elongation were 16.5 MPa and 4.4% without additive, which increased to 25.5, 20.1, 46.8 MPa and 8.1, 6.4, 8.6% in specimens containing polyalkenyl‐poly‐maleic‐anhydride‐amide, polyalkenyl‐poly‐maleic‐anhydride‐ester, and MA‐grafted‐low‐polymer additives, respectively. DSC curves shows that compatibilizers influenced thermal properties of the polymer blends and reveal affecting of crystalline phase formation process in the blends due to the compatibilization step. Additives A and B rather leads to influencing of PA crystallinities. According to the SEM and FTIR analysis well separated polypropylene and polyamide phases was observed in case of specimens absence of additives but only one well distributed phase by the applying of the synthetized coupling agents. © 2013 Wiley Periodicals, Inc. J. Appl. Polym. Sci., 2013     

Polyunsaturated fatty acids in plasma lipids of obese children with and without metabolic cardiovascular syndrome

Previously we reported significantly higher values of γ-linolenic acid (GLA, 18∶3n−6), dihomo-γ-linolenic acid (DHGLA, 20∶3n−6), and arachidonic acid (20∶4n−6) in plasma lipid classes in obese children than in nonobese controls. In the present study, fatty acid composition of plasma phospholipids (PL) and sterol esters (STE) was determined by high-resolution capillary gas-liquid chromatography in obese children with an without metabolic cardiovascular syndrome [MCS: defined as simultaneous presence of (i) dyslipidemia, (ii) hyperinsulinemia, (iii) hypertension, and (iv) impaired glucose tolerance] and in nonobese controls. Fatty acid composition of PL and STE lipids did not differ between obese children without MCS and controls. Obese children with MCS exhibited significantly lower linoleic acid (LA, 18∶2n−6) values in PL (17.43 [2.36], %wt/wt, median [range from the first to the third quartile]) than obese children without MCS (19.14 [3.49]) and controls (20.28 [3.80]). In contrast, PL GLA values were significantly higher in obese children with (0.13 [0.08]) than in those without MCS (0.08 [0.04]), whereas STE GLA values were higher in obese children with MCS (1.04 [0.72]) than in controls (0.62 [0.48]). DHGLA values in PL were significantly higher in obese children with MCS (4.06 [0.74]) than in controls (2.69 [1.60]). The GLA/LA ratio was significantly higher, whereas the AA/DHGLA ratio was significantly lower in obese children with MCS than in obese children without MCS and in controls. In this study, LA metabolism was affected only in obese children with but not in those without MCS. In obese children with MCS, δ6-desaturase activity appeared to be stimulated, whereas δ5-desaturase activity appeared to be inhibited. Disturbances in LA metabolism may represent an additional health hazard within the multifaceted clinical picture of MCS.     

Applicability of coumarin for detecting and measuring hydroxyl radicals generated by photoexcitation of TiO2 nanoparticles

Applicability of coumarin (COU) as fluorescent probe to detect and measure hydroxyl radicals generated by UV irradiation of aqueous suspension of TiO₂ was investigated under aerobic and anaerobic conditions. The fluorescent 7-hydroxycoumarin (7HC) was formed in argon-saturated suspension when silver ion was used as electron acceptor. The luminescence intensity increased with irradiation time until the deposition of silver on the surface of TiO₂ was completed and then the luminescence intensity was constant and proportional to the initial concentration of the silver ion. The low yield of 7HC related to the deposited silver (0.32%) indicates the appearance of efficient side reactions of hydroxyl radicals and holes. It has also been demonstrated that efficient electron donors reacting directly with photogenerated holes such as oxalic acid significantly reduce the yield of 7HC. Using oxalic acid of relatively high concentration in aerated suspension leads to the production of hydroxyl radical in thermal reactions followed by primary electron transfer steps.     

A polymerizable GFP variant

Flagellin has the ability to polymerize into long filaments under appropriate conditions. Our work aims at the construction of flagellin-based fusion proteins which possess polymerization ability and preserve the functional properties of the fusion partner as well. The hypervariable D3 domain of Salmonella flagellin, containing residues 190-283, is a good target for genetic engineering studies since it can be extensively modified or removed without disturbing the self-assembling ability. In this work a fusion construct of flagellin and the superfolder mutant of the green fluorescent protein were created by replacing D3 with superfolder green fluorescent protein (GFP). The obtained GFP variant was capable of forming stable, highly fluorescent filamentous assemblies. Our results imply that other proteins (enzymes, binding proteins, etc.) can also be furnished by polymerization ability in a similar way. This approach paves the way for the construction of multifunctional tubular nanostructures.     

Detection of Genomic Uracil Patterns

The appearance of uracil in the deoxyuridine moiety of DNA is among the most frequently occurring genomic modifications. Three different routes can result in genomic uracil, two of which do not require specific enzymes: spontaneous cytosine deamination due to the inherent chemical reactivity of living cells, and thymine-replacing incorporation upon nucleotide pool imbalances. There is also an enzymatic pathway of cytosine deamination with multiple DNA (cytosine) deaminases involved in this process. In order to describe potential roles of genomic uracil, it is of key importance to utilize efficient uracil-DNA detection methods. In this review, we provide a comprehensive and critical assessment of currently available uracil detection methods with special focus on genome-wide mapping solutions. Recent developments in PCR-based and in situ detection as well as the quantitation of genomic uracil are also discussed.