Hardware system of the Earth Simulator

The Earth Simulator (ES), developed under the Japanese government’s initiative “Earth Simulator project”, is a highly parallel vector supercomputer system. In this paper, an overview of ES, its architectural features, hardware technology and the result of performance evaluation are described.

In May 2002, the ES was acknowledged to be the most powerful computer in the world: 35.86 teraflop/s for the LINPACK HPC benchmark and 26.58 teraflop/s for an atmospheric general circulation code (AFES). Such a remarkable performance may be attributed to the following three architectural features; vector processor, shared-memory and high-bandwidth non-blocking interconnection crossbar network.

The ES consists of 640 processor nodes (PN) and an interconnection network (IN), which are housed in 320 PN cabinets and 65 IN cabinets. The ES is installed in a specially designed building, 65 m long, 50 m wide and 17 m high. In order to accomplish this advanced system, many kinds of hardware technologies have been developed, such as a high-density and high-frequency LSI, a high-frequency signal transmission, a high-density packaging, and a high-efficiency cooling and power supply system with low noise so as to reduce whole volume of the ES and total power consumption.

For highly parallel processing, a special synchronization means connecting all nodes, Global Barrier Counter (GBC), has been introduced.     

Inhibition of G1 cyclin expression in normal rat kidney cells by inostamycin, a phosphatidylinositol synthesis inhibitor

We previously reported that inostamycin, an inhibitor of CDP-DG: inositol transferase, inhibited cell proliferation in normal rat kidney (NRK) cells by blocking cell cycle progression at the G1 phase. In the present paper, we report the effect of inostamycin on the serum-induced activation of Ser/Thr protein kinases that are involved in G1 progression. In quiescent NRK cells mitogen-activated protein kinase (MAP kinase) and casein kinase II were activated within 15 min after serum addition. Neither activation was affected by the treatment with inostamycin. However, in the inostamycin-treated cell, cyclin-dependent kinase 2 (CDK2) failed to be activated after serum stimulation. Since serum-induced expression of cyclin E was also suppressed by inostamycin, this inhibitor would appear to block CDK2 activation by inhibiting cyclin E expression. Furthermore, inostamycin also inhibited cyclin D1 expression induced by serum; and consequently, hyperphosphorylation of retinoblastoma protein (pRB) by RB-kinases such as CDK4 and CDK2 was abolished, which would result in elimination of functional inactivation of pRB. Thus, early G1 arrest in NRK cells by inostamycin is due to the inhibition of cyclin D1 and E expressions.     

Successive pattern classification based on test feature classifier and its application to defect image classification

A novel successive learning algorithm based on a Test Feature Classifier is proposed for efficient handling of sequentially provided training data. The fundamental characteristics of the successive learning are considered. In the learning, after recognition of a set of unknown data by a classifier, they are fed into the classifier in order to obtain a modified performance. An efficient algorithm is proposed for the incremental definition of prime tests which are irreducible combinations of features and capable of classifying training patterns into correct classes. Four strategies for addition of training patterns are investigated with respect to their precision and performance using real pattern data. A real-world problem of classification of defects on wafer images has been dealt with by the proposed classifier, obtaining excellent performance even through efficient addition strategies.     

Subarachnoid haemorrhage induced proliferation of leptomeningeal cells and deposition of extracellular matrices in the arachnoid granulations and subarachnoid space. Immunhistochemical study

Subarachnoid haemorrhage (SAH) often leads to subarachnoid fibrosis and resultant normal pressure hydrocephalus; however, how subarachnoid fibrosis occurs is unknown. We examined the changes within arachnoid granulations (AGs) and the subarachnoid space (SAS) chronologically at the parasagittal region obtained from patients with SAH at autopsy and made comparison with controls by immunostaining for cytokeratin, specific marker for leptomeningeal cells and by the elastica Masson-Goldner methods. Within a week some AGs were torn, and many inflammatory cells filled the AGs and SAS. Cytokeratin positive cells were scarce. During the next two weeks cytokeratin positive cells increased. After three weeks, AGs and SAS were filled by dense deposits of extracellular matrices surrounded by multiple layers of leptomeningeal cells.     

Effects of partial recrystallization on high-cycle fatigue deformation and crack generation of a nitrogen-strengthened 32Mn-7Cr austenitic steel at liquid-nitrogen temperature

To achieve higher fatigue resistance against subsurface crack generation, both the refinement of grain structure and the introduction of mobile dislocations on various slip systems have been shown to be effective in the 32Mn-7Cr austenitic steel. A novel treatment which consisted of cold grooved rolling and partial recrystallization was introduced to modify the microstructure. High-cycle fatigue properties and fatigue-crack generation were investigated for both the solution-treated (ST) and the partially recrystallized (PR) materials at 77 K. The PR material displayed higher fatigue strength than the ST material, especially in the high-cycle regime. No subsurface crack generation was detected for the PR material; however, it appeared in the lower peak stress and/or in the longer-life range for the ST material. Intergranular facets formed a subsurface crack initiation site in the ST material. Since the dislocation structure that developed in the fatigued PR material assisted homogeneous and multidirectional plastic deformation, the localized deformation and/or the stress concentration at the grain boundaries by coplanar arrays were believed to be relieved. Therefore, intergranular cracking due to incompatibility at a grain boundary may disappear.     

Total emission control for managing regional water quality: a game theoretic decision process

A simple game theoretic model with hierarchical structure is developed for regulating the total amount of pollutant discharged by all the effluent producers in a given region, where the allowable limit on total emission, that is the environmental carrying capacity, is assumed to be given. It is proposed that the total emission is to be allocated amongst all the polluters so as to maximize the social benefit, and that the social benefit is to be allocated through taxation on the companies under the criterion of impartiality. The concept of impartiality is defined as equal individual satisfaction for the polluters who cooperate. This concept is applied to solve the characteristic function game. A numerical example is included.     

External stimulus-responsive biomaterials designed for the culture and differentiation of ES,iPS, and adult stem cells

The physical and chemical characteristics of biomaterial surface and hydrogels can be altered by external stimuli, such as light irradiation, temperature changes, pH shifts, shear stress forces, electrical forces, and the addition of small chemical molecules. Such external stimulus-responsive biomaterials represent promising candidates that have been developed for the culture and differentiation of embryonic stem (ES) cells, induced pluripotent stem (iPS) cells, and adult stem cells. Biomaterials that are designed to respond in a reversible manner to specific external signals can be formed on micropatterned or non-micropatterned surface, in hydrogels, or on microcarriers. Stem cells and the cells differentiated from them into specific tissue lineages can be cultured and/or differentiated on dishes with immobilized external stimulus-responsive polymers. Cells can be detached from these dishes without using an enzymatic digestion method or a mechanical method when the appropriate external stimulus is generated on the surface. This review discusses the polymers and polymeric designs employed to produce surface and hydrogels for stem cell culture, differentiation, and/or cell detachment using various external stimuli.     

Influence of low temperature working on microstructure and mechanical properties of AI-7Si-(Fe) alloys

Changes in the microstructure and mechanical properties of Al-7Si-(Fe) alloys by low temperature working have been investigated. The size and shape of eutectic Si and intermetallic AlSiFe compound were controlled by the low temperature working process. This process consisted of repeated cold working at 77 K and recovery treatment at 793 K. By applying this process to the Al-7Si-1Fe alloy, the eutectic Si and acicular Fe compound(β-AlSiFe) phases were broken down to the size of 2-3 μm, with spherical shape. The refined particles were uniformly distributed, and a fine microstructure was obtained. The strength and elongation of Al-7Si-1Fe alloy increased as the temperature was lowered due to the microstructural refinement. This elongation was well reflected in the fracture surface.