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排序方式: 共有194条查询结果,搜索用时 15 毫秒
1.
Li Weizhong; Jaroszewski Lukasz; Godzik Adam 《Protein engineering, design & selection : PEDS》2002,15(8):643-649
Sequence databases are rapidly growing, thereby increasing thecoverage of protein sequence space, but this coverage is unevenbecause most sequencing efforts have concentrated on a smallnumber of organisms. The resulting granularity of sequence spacecreates many problems for profile-based sequence comparisonprograms. In this paper, we suggest several strategies thataddress these problems, and at the same time speed up the searchesfor homologous proteins and improve the ability of profile methodsto recognize distant homologies. One of our strategies combinesdatabase clustering, which removes highly redundant sequence,and a two-step PSI-BLAST (PDB-BLAST), which separates sequencespaces of profile composition and space of homology searching.The combination of these strategies improves distant homologyrecognitions by more than 100%, while using only 10% of theCPU time of the standard PSI-BLAST search. Another method, intermediateprofile searches, allows for the exploration of additional searchdirections that are normally dominated by large protein sub-familieswithin very diverse families. All methods are evaluated witha large fold-recognition benchmark. 相似文献
2.
Ly Thi Thanh Le Lukasz Kotula Kadambot H. M. Siddique Timothy D. Colmer 《International journal of molecular sciences》2021,22(4)
Grain legumes are important crops, but they are salt sensitive. This research dissected the responses of four (sub)tropical grain legumes to ionic components (Na+ and/or Cl−) of salt stress. Soybean, mungbean, cowpea, and common bean were subjected to NaCl, Na+ salts (without Cl−), Cl− salts (without Na+), and a “high cation” negative control for 57 days. Growth, leaf gas exchange, and tissue ion concentrations were assessed at different growing stages. For soybean, NaCl and Na+ salts impaired seed dry mass (30% of control), more so than Cl− salts (60% of control). All treatments impaired mungbean growth, with NaCl and Cl− salt treatments affecting seed dry mass the most (2% of control). For cowpea, NaCl had the greatest adverse impact on seed dry mass (20% of control), while Na+ salts and Cl− salts had similar intermediate effects (~45% of control). For common bean, NaCl had the greatest adverse effect on seed dry mass (4% of control), while Na+ salts and Cl− salts impaired seed dry mass to a lesser extent (~45% of control). NaCl and Na+ salts (without Cl−) affected the photosynthesis (Pn) of soybean more than Cl− salts (without Na+) (50% of control), while the reverse was true for mungbean. Na+ salts (without Cl−), Cl− salts (without Na+), and NaCl had similar adverse effects on Pn of cowpea and common bean (~70% of control). In conclusion, salt sensitivity is predominantly determined by Na+ toxicity in soybean, Cl− toxicity in mungbean, and both Na+ and Cl− toxicity in cowpea and common bean. 相似文献
3.
Prithima R. Mosaly Hua Guo Lukasz Mazur 《International journal of human-computer interaction》2013,29(20):1883-1891
ABSTRACTThe goal of this study was to assess the relationship of task difficulty and mental effort with performance during physicians’ interaction with electronic health records (EHRs). A total of 38 physicians were asked to identify abnormal results and take follow-up action to “close the loop” on care delivery. Task difficulty was quantified via task-flow strategies and computer mouse-click patterns. Mental effort was quantified using eye movements based on changes in pupillary dilations (task evoked pupillary response or TEPR) and blink rate. Performance was quantified based on commission errors (error vs. no-error). Results indicated that physicians had different task-flow strategies; however, with improved awareness of the patient status, they exhibited an optimal task-flow strategy. Overall, performance was related to task-flow strategies, computer mouse-click patterns, and blink rate, indicating that physicians had lower task-difficulty and experienced lower mental effort with improved awareness of patient follow-up status. This is an important finding demonstrating that task-flows are a dominant predictor of physician performance when comparing between EHR designs. On the contrary, mouse-click patterns and blink rate are both useful predictors of physician performance when assessment was done within an EHR. 相似文献
4.
Martin Schicht Kamila Riedlov Mercedes Kukulka Wenyue Li Aurelius Scheer Fabian Garreis Christina Jacobi Friedrich Paulsen Lukasz Cwiklik Lars Bruer 《International journal of molecular sciences》2022,23(10)
The ocular surface is in constant interaction with the environment and with numerous pathogens. Therefore, complex mechanisms such as a stable tear film and local immune defense mechanisms are required to protect the eye. This study describes the detection, characterization, and putative role of surfactant protein G (SP-G/SFTA2) with respect to wound healing and surface activity. Bioinformatic, biochemical, and immunological methods were combined to elucidate the role of SP-G in tear film. The results show the presence of SP-G in ocular surface tissues and tear film (TF). Increased expression of SP-G was demonstrated in TF of patients with dry eye disease (DED). Addition of recombinant SP-G in combination with lipids led to an accelerated wound healing of human corneal cells as well as to a reduction of TF surface tension. Molecular modeling of TF suggest that SP-G may regulate tear film surface tension and improve its stability through specific interactions with lipids components of the tear film. In conclusion, SP-G is an ocular surface protein with putative wound healing properties that can also reduce the surface tension of the tear film. 相似文献
5.
Emily H. Kuhns Xavier Martini Yolani Tribuiani Monique Coy Christopher Gibbard Jorge Peña Jiri Hulcr Lukasz L. Stelinski 《Journal of chemical ecology》2014,40(4):355-362
The redbay ambrosia beetle, Xyleborus glabratus, is an invasive wood-boring beetle that has become established in the southeastern United States. The beetle transmits the causal pathogen of lethal laurel wilt to susceptible host trees, which include redbay, an important forest community species, and avocado, a valuable food crop. By examining odors of redbay wood, we developed an artificial lure that captured X. glabratus in redbay forests. Eucalyptol was a critical component of the blend for beetle attraction, and eucalyptol alone in large quantities attracted X. glabratus. Furthermore, eucalyptol stimulated boring by X. glabratus into paper arenas. The results suggest that eucalyptol contributes to host selection behavior of X. glabratus and may be useful for management of this pathogen vector. 相似文献
6.
Marzanna Ksiazek Maria Richert Aam Tchorz Lukasz Boron 《Journal of Materials Engineering and Performance》2012,21(5):690-695
There is a growing interest in metal-ceramic bonding for wide range of applications in electronic devices and high technology
industry for fabrication of metal matrix composites and bonding of ceramic components to metals. The object of the work was
to study the effect of Ti, Nb, and Ti + Nb thin films deposited by PVD method on alumina substrates on structure and bond
strength properties of Al/Al2O3 joints. The joints were fabricated using the results of a wetting experiment and the sessile drop method at a temperature
of 1223 K in a vacuum of 0.2 MPa for 30 min of contact. The structure of the metal/ceramic interface was investigated using
scanning electron microscopy. The elemental distribution at the metal-ceramic interface was analyzed using energy dispersive
x-ray spectroscopy. Transmission electron microscopy was also used to investigate some aspects of the metal/ceramic interface.
The bond strength properties of joints were measured using shear test. The shear strength results demonstrated significant
improvement of shear strength of Al/Al2O3 joints due to the application of Ti + Nb thin film on alumina substrate. Microstructural investigations of the interface
indicated that Al/coating/Al2O3 couples have diffusion transition interface which influences the strengthening of these joints. A conclusion could be drawn
that the presence of thin film layers changes the character of interaction and leads to the formation of new reaction products
in the bonding layer. 相似文献
7.
Lukasz Pietrzak Przemyslaw Sowinski Joanna Bojda Ewa Piorkowska Andrzej Galeski 《应用聚合物科学杂志》2016,133(28)
We hypothesized that polymer crystal anisotropy is advantageous for toughening of polymer composites involving easy slip network of oriented crystalline layers around filler particles. To this end, composites of syndiotactic polypropylene (sPP) with high concentration of submicrometer calcium carbonate particles were prepared and examined because usual sPP crystals exhibit high packing anisotropy. The specific orientation of sPP lamellae around chalk grains was found, which is supposed to facilitate the plastic deformation of polymer matrices. The compression molded bars of the composite exhibited markedly higher Izod impact strength than those of neat sPP. Toughening was even enhanced in the injection molded composite, for which 4.5‐fold increase in the impact strength was achieved. Injection‐induced orientation of the disordered form I sPP crystals was enhanced in the composite. The injection molded tensile specimens exhibited also a good drawability. Debonding at chalk–sPP interface occurred both during the impact and tensile tests facilitating the plastic deformation of sPP matrix. Chalk did not have any significant influence on the thermal properties of the composites but it affected the rheological behavior, increasing the loss and storage moduli, and the viscosity. Highly filled sPP composite exhibited solid‐like behavior in a molten state with the storage modulus exceeding the loss modulus in the entire frequency range. © 2016 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2016 , 133, 43651. 相似文献
8.
Magdalena Luczak Joanna Suszynska-Zajczyk Lukasz Marczak Dorota Formanowicz Elzbieta Pawliczak Maria Wanic-Kossowska Maciej Stobiecki 《International journal of molecular sciences》2016,17(5)
The major cause of mortality in patients with chronic kidney disease (CKD) is atherosclerosis related to traditional and non-traditional risk factors. However, the understanding of the molecular specificity that distinguishes the risk factors for classical cardiovascular disease (CVD) and CKD-related atherosclerosis (CKD-A) is far from complete. In this study we investigated the disease-related differences in the proteomes of patients with atherosclerosis related and non-related to CKD. Plasma collected from patients in various stages of CKD, CVD patients without symptoms of kidney dysfunction, and healthy volunteers (HVs), were analyzed by a coupled label-free and mass spectrometry approach. Dysregulated proteins were confirmed by an enzyme-linked immunosorbent assay (ELISA). All proteomic data were correlated with kidney disease development and were subjected to bioinformatics analysis. One hundred sixty-two differentially expressed proteins were identified. By directly comparing the plasma proteomes from HVs, CKD, and CVD patients in one study, we demonstrated that proteins involved in inflammation, blood coagulation, oxidative stress, vascular damage, and calcification process exhibited greater alterations in patients with atherosclerosis related with CKD. These data indicate that the above nontraditional risk factors are strongly specific for CKD-A and appear to be less essential for the development of “classical” CVD. 相似文献
9.
Rafal M. Molak Krystian Paradowski Tomasz Brynk Lukasz Ciupinski Zbigniew Pakiela Krzysztof J. Kurzydlowski 《International Journal of Pressure Vessels and Piping》2009,86(1):43-47
The aim of this study was to measure the mechanical properties of weld material taken from a single weld bead laid down on a 316L steel plate. Due to the low available volume of weld material, microsamples with a total length of 5.5 mm were used. The Digital Image Correlation method (DIC), which enables measurement of mechanical properties of very small samples, was employed for the strain measurements in a uniaxial tensile test. Samples were cut out from three different zones of the specimen: plate, weld, and the heat affected zone. The material from heat affected zone showed the highest value of the Ultimate Tensile Strength (UTS) (580 ± 7 MPa) and yield strength (339 ± 6 MPa). Plate material had lower UTS (559 ± 5 MPa) and yield strength (304 ± 7 MPa). The lowest values of UTS (526 ± 6 MPa) and yield strength (291 ± 8 MPa) have been revealed for the weld. The values obtained for UTS, yield strength and elongation to failure for the plate material were compared with data obtained using standard test specimens. No significant differences between results obtained for the microsamples and standard samples have been found. 相似文献
10.
Lukasz A Kurgan Krzysztof J Cios Scott Dick 《IEEE transactions on systems, man, and cybernetics. Part B, Cybernetics》2006,36(1):32-53
Business intelligence and bioinformatics applications increasingly require the mining of datasets consisting of millions of data points, or crafting real-time enterprise-level decision support systems for large corporations and drug companies. In all cases, there needs to be an underlying data mining system, and this mining system must be highly scalable. To this end, we describe a new rule learner called DataSqueezer. The learner belongs to the family of inductive supervised rule extraction algorithms. DataSqueezer is a simple, greedy, rule builder that generates a set of production rules from labeled input data. In spite of its relative simplicity, DataSqueezer is a very effective learner. The rules generated by the algorithm are compact, comprehensible, and have accuracy comparable to rules generated by other state-of-the-art rule extraction algorithms. The main advantages of DataSqueezer are very high efficiency, and missing data resistance. DataSqueezer exhibits log-linear asymptotic complexity with the number of training examples, and it is faster than other state-of-the-art rule learners. The learner is also robust to large quantities of missing data, as verified by extensive experimental comparison with the other learners. DataSqueezer is thus well suited to modern data mining and business intelligence tasks, which commonly involve huge datasets with a large fraction of missing data. 相似文献