On the Easy Use of Scientific Computing Services for Large Scale Linear Algebra and Parallel Decision Making with the P-Grade Portal

Scientific research is becoming increasingly dependent on the large-scale analysis of data using distributed computing infrastructures (Grid, cloud, GPU, etc.). Scientific computing (Petitet et al. 1999) aims at constructing mathematical models and numerical solution techniques for solving problems arising in science and engineering. In this paper, we describe the services of an integrated portal based on the P-Grade (Parallel Grid Run-time and Application Development Environment) portal (http://www.p-grade.hu) that enables the solution of large-scale linear systems of equations using direct solvers, makes easier the use of parallel block iterative algorithm and provides an interface for parallel decision making algorithms. The ultimate goal is to develop a single sign on integrated multi-service environment providing an easy access to different kind of mathematical calculations and algorithms to be performed on hybrid distributed computing infrastructures combining the benefits of large clusters, Grid or cloud, when needed.     

Piezoelectric properties in two-dimensional materials: Simulations and experiments

The piezoelectric effect, discovered in 1880 by Jacques and Pierre Curie, effectively allows to transduce signals from the mechanical domain to the electrical domain and vice versa. For this reason, piezoelectric devices are already ubiquitous, including, for instance, quartz oscillators, mechanical actuators with sub-atomic resolution and microbalances. However, the ability to synthesize two-dimensional (2D) materials may enable the fabrication of innovative devices with unprecedented performance. For instance, many materials which are not piezoelectric in their bulk form become piezoelectric when reduced to a single atomic layer; moreover, since all the atoms belong to the surface, piezoelectricity can be effectively engineered by proper surface modifications. As additional advantages, 2D materials are strong, flexible, easy to be co-integrated with conventional integrated circuits or micro-electromechanical systems and, in comparison with bulk or quasi-1D materials, easier to be simulated at the atomistic level. Here, we review the state of the art on 2D piezoelectricity, with reference to both computational predictions and experimental characterization. Because of their unique advantages, we believe 2D piezoelectric materials will substantially expand the applications of piezoelectricity.     

A subject-specific software solution for the modeling and the visualization of muscles deformations

Today, to create and to simulate a virtual anatomical version of a subject is useful in the decision process of surgical treatments. The muscular activity is one of the factors which can contribute to abnormal movements such as in spasticity or static contracture. In this paper, we propose a numerical solution, based on the Finite Element (FE) method, able to estimate muscles deformations during contraction. Organized around a finite element solver and a volumetric environment, this solution is made of all the modeling and simulation processes from the discretization of the studied domain to the visualization of the results. The choices of materials and properties of the FE model are also presented such as the hyperelasticity, the contention model based on inter-meshes neighboring nodes pairing, and the estimation of nodal forces based on the subject-specific muscular forces and action lines.

Versatile Tuning of Humanoid Agent Activity

In this paper, we present an integration framework for heterogeneous motion generators. The objective is to outline issues that are currently easily solved in professional post-processing systems used in film and game production but which cannot be transposed as is to real-time systems with autonomous agents. We summarise our approach for articulated agent-modelling and their animation by combining heterogeneous motion generators, such as real-time motion capturing, key-framing, inverse kinematics, procedural walking. We propose an agent/action-oriented framework. Activity properties such as action simultaneity and motion blending, spatial coherence, motion-flow update schemes, agent attachments, and location corrections, are the main topics handled by our generic animation framework. Numerous examples throughout the paper illustrate our approach and outline encountered problems and solutions or open research directions.     

Improving virus protection with an efficient secure architecture with memory encryption, integrity and information leakage protection

Malicious software and other attacks are a major concern in the computing ecosystem and there is a need to go beyond the answers based on untrusted software. Trusted and secure computing can add a new hardware dimension to software protection. Several secure computing hardware architectures using memory encryption and memory integrity checkers have been proposed during the past few years to provide applications with a tamper resistant environment. Some solutions, such as HIDE, have also been proposed to solve the problem of information leakage on the address bus. We propose the CRYPTOPAGE architecture which implements memory encryption, memory integrity protection checking and information leakage protection together with a low performance penalty (3% slowdown on average) by combining the Counter Mode of operation, local authentication values and MERKLE trees. It has also several other security features such as attestation, secure storage for applications and program identification. We present some applications of the CRYPTOPAGE architecture in the computer virology field as a proof of concept of improving security in presence of viruses compared to software only solutions.     

ProteinParser--a community based tool for the generation of a detailed protein consensus and FASTA output

Comparison of bioinformatic data is a common application in the life sciences and beyond. In this communication, a novel Java based software tool, ProteinParser, is outlined. This software tool calculates a detailed consensus, or most common, amino acid at a given position in an aligned protein set, whilst also generating a full consensus protein FASTA output. A second application of this software tool, computing a consensus amino acid given a tolerance threshold, is also demonstrated. The phytase and the common bacterial beta-lactamase proteins are analysed as 'proof of concept' examples. Consensus proteins, as generated by ProteinParser, are regularly utilised in the selection of residues for protein stabilisation mutagenesis; however, this widely applicable software tool will find many alternative applications in areas such as protein homology modelling.     

Links Between Sex-Typed Time Use in Middle Childhood and Gender Development in Early Adolescence.

The authors studied sex-typing in the kinds (e.g., sports, handicrafts) and social contexts (same- vs. other-sex companions) of children's free time activities, and the links between sex-typed activities and gender development over 2 years. Participants were 200 White, working- and middle-class children (103 girls, 97 boys; mean age = 10.86 years). In annual home interviews, children rated their self-esteem, gender role attitudes and sex-typed personality qualities, academic interests, and school grades. During 7 nightly phone interviews each year, children reported on their activities. Boys were more sex-typed than girls in their peer activities, and children were least sex-typed in their activities with siblings. Sex-typed activities in middle childhood predicted individual differences in gender development in early adolescence (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Perceptions of the health and convenience characteristics of fresh and dried fruits

Dried fruits consumption has not received much research attention, although these foods are associated with potential health benefits. Therefore, the aim of this study was to compare fresh fruits and dried fruits on measures of health, convenience and consumer feelings.An on-line questionnaire that measured consumers' perceptions of the health benefits and convenience characteristics and their feelings about the consumption of both fresh fruits (apples and plums) and dried fruits (e.g., raisins, dates, and apricots) was completed by 693 respondents (Polish, French, and Dutch).Generally, fresh fruits were perceived to be healthier and less convenient than dried fruits. Consumers also reported more positive feelings about the consumption of fresh fruits compared to dried fruits. The more that the respondents were willing to sacrifice for their health, the more positively they rated the health aspects of both fresh and dried fruits, as well as several perceptions of convenience of both fresh and dried fruits. Health preoccupation was unrelated to most of the convenience perceptions and was associated with lower scores on several perceptions of healthiness. Recommendations for the consumer-oriented development of dried fruits are also provided.