Swoop: A Web Ontology Editing Browser

In this paper, we describe Swoop, a hypermedia inspired Ontology Browser and Editor based on OWL, the recently standardized Web-oriented ontology language. After discussing the design rationale and architecture of Swoop, we focus mainly on its features, using illustrative examples to highlight its use. We demonstrate that with its Web-metaphor, adherence to OWL recommendations and key unique features, such as Collaborative Annotation using Annotea, Swoop acts as a useful and efficient Web Ontology development tool. We conclude with a list of future plans for Swoop, that should further increase its overall appeal and accessibility.     

The Dark Side of the Semantic Web

Many of the exciting and important things that are happening with the Semantic Web come from the Web side rather than the AI side. So, to many AI researchers, this part of the technology is unknown and is thus the "dark side" of the Semantic Web.     

A region within murine chromosome 7F4, syntenic to the human 11q13 amplicon, is frequently amplified in 4NQO-induced oral cavity tumors

Our previous reports have shown that two thirds of 4-nitroquinoline-1-oxide (4NQO)-induced murine oral squamous cell carcinomas (SCC) have Hras1 mutations. Loss of heterozygosity (LOH) involving the distal portion of chromosome (Chr) 7 occurred in half of the tumors with Hras1 mutations. Here, we demonstrate that five of six tumors with LOH have 4-8-fold amplification involving the distal portion of Chr 7 (7F4). Ccnd1. Fgf4 and Fgf3, within the most telomeric region of Chr 7 (70.5 cM), are co-amplified. The region is syntenic to a previously identified human amplicon at 11q13. Only one out of eight tumors without LOH at Chr 7 had twofold amplification; the other seven had no detectable amplification. Significant amplification is restricted to the chromosome with the Hras1 mutation. Gene amplification occurred without overexpression since only one of five tumors with amplification and one of six tumors without Ccnd1 amplification expressed increased protein. Although amplification of 11q13 occurs rather frequently in human tumors, 4NQO-induced oral cavity tumors in inbred mice are the first example of a murine tumor with consistent amplification. Our observations are strikingly similar to human head and neck SCC where overexpression of genes within the 11q13 amplicon is inconsistently detected. The amplification of genes localized to human 11q13 and the syntenic region on murine Chr 7 during tumorigenesis suggests that similar structural elements are present which predispose these regions to amplification during malignant transformation.     

Lipoprotein lipid and protein synthesis in experimental nephrosis and plasmapheresis. I: Studies in rat in vivo

The incorporation of L-4,5-[³H]leucine into the ultracentrifugally separated apolipoproteins of very low, low, and high density lipoproteins (VLDL, LDL, HDL) and into serum albumin was found three-to four-fold higher in nephrotic than in normal rats one hour after intravenous injection. Incorporation of leucine into the circulating lipids was negligible. Increases of similar magnitude were obtained in the incorporation of simultaneously injected 1,5[¹⁴C] citrate into the lipids of VLDL, LDL, and HDL of nephrotic rats. Of the citrate carbons incorporated into serum and liver lipids, the proportion in cholesterol was higher in nephrotic rats when compared to normal rats. The incorporation of both precursors into total proteins and lipids of the liver vs. the incorporation into the lipoproteins was relatively lower in nephrotic than in control rats, indicating a preferential channeling into secretable products. The occurrence of enhanced new lipid synthesis in nephrosis was corroborated by the finding of markedly enhanced synthesis of lipoprotein-borne fatty acids and cholesterol from³H₂O. These results point out that while leucine is not an efficient in vivo precursor of lipoprotein lipids in nephrosis, de novo lipogenesis proceeds from other precursors. Similar trend of changes, though of smaller magnitude, was elicited in rats after double plasmapheresis, 18 hr apart, when measured 3 hr after the second plasma withdrawal. This indicates that the loss of circulating proteins either by direct removal or through kidney lesion stimulates the compensatory hepatic response involving excessive lipoprotein synthesis. Time-course studies showed that peak incorporation of leucine and citrate into the protein and lipid components of lipoproteins, respectively, as well as into serum albumin, occurred coincidentally 3 hr after the second plasmapheresis, suggesting an interdependence of the enhanced protein and lipid synthesis.     

Overlooked physical diagnoses in chronic pain patients involved in litigation, Part 2. The addition of MRI, nerve blocks, 3-D CT, and qualitative flow meter

This study followed 120 chronic pain patients referred to a multidisciplinary pain center. The referral diagnosis for many patients, such as "chronic pain," "psychogenic pain," or "lumbar strain," was frequently found to be incomplete or inaccurate (40%) following a multidisciplinary evaluation that used appropriate diagnostic studies, including magnetic resonance imaging, computed tomography, nerve blocks, and qualitative flowmeter. Significant abnormalities were discovered in 76% of the diagnostic tests. An organic origin for pain was found in 98% of these patients. The patients were discharged with objective verification of diagnoses including facet disease, nerve entrapment, temporomandibular joint disease, thoracic outlet syndrome, and herniated discs.     

PRA*: Massively Parallel Heuristic Search

In this paper we describe a variant of A* search designed to run on the massively parallel, SIMD Connection Machine (CM-2). The algorithm is designed to run in a limited memory by the use of a retraction technique which allows nodes with poor heuristic values to be removed from the open list until such time as they may need reexpansion, more promising paths having failed. Our algorithm, called PRA* (for Parallel Retraction A*), is designed to maximize use of the Connection Machine′s memory and processors. In addition, the algorithm is guaranteed to return an optimal path when an admissible heuristic is used. Results comparing PRA* to Korf′s IDA* for the fifteen puzzle show significantly fewer node expansions for PRA*. In addition, empirical results show significant parallel speedups, indicative of the algorithm′s design for high processor utilization.     

Revising Our Mission

This issue's column presents highlights from our 2006 editorial board meeting to help you better understand where we see the magazine going.     

Modification of EPDM with Alkylphenol Polysulfide for Use in Tire Sidewalls, 2 – Mechanistic and Morphological Characterizations

It has been shown that the mechanical properties of NR/BR/EPDM blends can be improved by using APPS as a modifier. In this paper, it is demonstrated that modification of EPDM with APPS takes place and saturation occurs when the APPS amount reaches 5 wt.‐%. It is shown that the rubber/carbon black affinity improves by using APPS‐grafted EPDM in the blend. TEM and STEM images clearly show that the NR/BR/APPS‐EPDM blend contains a significantly higher content of homogeneous rubber phase than the unmodified NR/BR/EPDM blend. The much better distribution of the carbon black in the APPS‐EPDM phase is considered the main reason for the improvement in properties of the blend.