Direct algebraic reconstruction and optimal sampling in vectorfield tomography

Vector field tomography has been proven to be a very powerful technique for the noninvasive determination of vector field distribution such as in the case of a fluid velocity field. We show that classical tomographic sampling conditions ran essentially be applied to vector field tomography. Thus, essentially the same sampling schemes are obtained, and the interlaced scheme is also shown to be the most efficient scheme in vector field tomography. We then propose a direct algebraic approach for vector field tomography, with an efficient and robust algorithm for interlaced schemes. Numerical experiments showing the superiority of interlaced schemes are provided     

Comparison of Analytic and Algebraic Methods for Motion-Compensated Cone-Beam CT Reconstruction of the Thorax

Respiratory motion is a major concern in cone-beam (CB) computed tomography (CT) of the thorax. It causes artifacts such as blur, streaks, and bands, in particular when using slow-rotating scanners mounted on the gantry of linear accelerators. In this paper, we compare two approaches for motion-compensated CBCT reconstruction of the thorax. The first one is analytic; it is heuristically adapted from the method of Feldkamp, Davis, and Kress (FDK). The second one is algebraic: the system of linear equations is generated using a new algorithm for the projection of deformable volumes and solved using the simultaneous algebraic reconstruction technique (SART). For both methods, we propose to estimate the motion on patient data using a previously acquired 4-D CT image. The methods were tested on two digital and one mechanical motion-controlled phantoms and on a patient dataset. Our results indicate that the two methods correct most motion artifacts. However, the analytic method does not fully correct streaks and bands even if the motion is perfectly estimated due to the underlying approximation. In contrast, the algebraic method allows us full correction of respiratory-induced artifacts.     

Compensation of some time dependent deformations in tomography

This work concerns 2D + t dynamic tomography. We show that a much larger class of deformations than the affine transforms can be compensated analytically within filtered back projection algorithms in 2D parallel beam and fan beam dynamic tomography. We present numerical experiments on the Shepp and Logan phantom showing that nonaffine deformations can be compensated. A generalization to 3D cone beam tomography is proposed.     

FTIR spectroscopy and nanotribological comparative studies: influence of the adsorbed water layers on the tribological behaviour

Under ambient conditions, a water film is always present on a silica substrate and generates additional capillary forces between the nanotip and the studied surface. In the present paper, we report AFM measurements of pull-off and friction forces as a function of the temperature and a comparative FTIR spectroscopy study. The AFM results show a net decrease of the forces as the temperature increases, while the IR spectroscopy indicates that the liquid film is removed at high temperature. Consequently, we deduce that a liquid neck is created between the tip and the surface and that the forces measured are mostly capillary forces. The present work shows that temperature studies with AFM can be a useful way to probe the influence of the capillary force in turn to characterize surface properties.     

The behavior of membrane proteins in monolayers at the gas–water interface: comparison between photosystem II, rhodopsin and bacteriorhodopsin

It has been postulated, without supporting evidence, for decades that proteins are denatured once spread in monolayers at the gas–water interface. In the present study, the effect of different experimental conditions on the structure of three membrane proteins has been investigated by polarization modulated infrared reflection absorption spectroscopy in situ in monolayers at the gas–water interface. We have found that photosystem II core complex (PS II CC) is less sensitive to denaturation than rhodopsin. In fact, denaturation of rhodopsin could only be prevented when spreading was performed at 4°C. In contrast, bacteriorhodopsin was found to remain native when monolayer spreading was performed in conditions that were found to denature both PS II CC and rhodopsin. This behavior may be explained by the two-dimensional crystalline structure of bacteriorhodopsin. In conclusion, conditions can be found where the native structure of membrane proteins is maintained after their spreading in monolayers at the gas–water interface.     

Increasing detectivity of polarization modulation infrared reflection-absorption spectroscopy for the study of ultrathin films deposited on various substrates

In this paper, we present a simple way to increase the sensitivity of polarization modulation infrared reflection-absorption spectroscopy (PM-IRRAS) for the study of ultrathin films deposited on dielectric and semiconductor substrates. The enhancement of the absorption band intensity is obtained by reducing the signal arising from the substrate. This is achieved by adding a polarizer after the sample in order to balance the polarized reflectivities of the sample. As a consequence, the contribution of the film to the PM-IRRAS signal is increased relative to that of the substrate. An enhancement factor of about 10 has been obtained for ultrathin organic films deposited on glass and spread at the air-water interface. This method has also allowed the study of the very thin native oxide layer present on silicon without the need for the reference spectrum of bare silicon.     

Synergy between ovalbumin and lysozyme leads to non-additive interfacial and foaming properties of mixtures

This study was undertaken to characterize the interfacial and foaming properties of different mixtures at the air–water interface under the same concentration range, and to put into light putative particular behaviors of mixtures. Different complementary techniques have been coupled such as null ellipsometry, surface tension and shear elastic constant measurements as well as polarization-modulation infrared reflection–absorption spectroscopy (PM-IRRAS). Moreover, the foaming properties were also investigated by a bubbling method.     

Structure, orientation and affinity for interfaces and lipids of ideally amphipathic lytic LiKj(i=2j) peptides

The behavior of lytic ideally amphipathic peptides of generic composition LiKj(i=2j) and named LKn, n=i+j, is investigated in situ by the monolayer technique combined with the recently developed polarization modulation IR spectroscopy (PMIRRAS). A change in the secondary structure occurs versus peptide length. Peptides longer than 12 residues fold into alpha-helices at interfaces as expected from their design, while enough shorter peptides, from 9 down to 5 residues, form intermolecular antiparallel beta-sheets. Analysis of experimental and calculated PMIRRAS spectra in the amide I and II regions show that peptides are flat oriented at the interfaces. Structures and orientation are preserved whatever the nature of the interface, air/water or DMPC monolayer, and the lateral pressure. Peptide partition constants, KaffPi, are estimated from isobar surface increases of DMPC monolayers. They strongly increase when Pi decreases from 30 mN/m to 8 mN/m and they vary with peptide length with an optimum for 12 residues. This non-monotonous dependence fits with data obtained in bilayers and follows the hemolytic activity of the peptides. Lipid perturbations due to peptide insertion essentially detected on the PO4- and CO bands indicate disorder of the lipid head groups. Lysis induced on membranes by such peptides is proposed to first result from their flat asymmetric insertion.     

Polarization-modulated infrared spectroscopy and x-ray reflectivity of photosystem II core complex at the gas-water interface

The state of photosystem II core complex (PS II CC) in monolayer at the gas-water interface was investigated using in situ polarization-modulated infrared reflection absorption spectroscopy and x-ray reflectivity techniques. Two approaches for preparing and manipulating the monolayers were examined and compared. In the first, PS II CC was compressed immediately after spreading at an initial surface pressure of 5.7 mN/m, whereas in the second, the monolayer was incubated for 30 min at an initial surface pressure of 0.6 mN/m before compression. In the first approach, the protein complex maintained its native alpha-helical conformation upon compression, and the secondary structure of PS II CC was found to be stable for 2 h. The second approach resulted in films showing stable surface pressure below 30 mN/m and the presence of large amounts of beta-sheets, which indicated denaturation of PS II CC. Above 30 mN/m, those films suffered surface pressure instability, which had to be compensated by continuous compression. This instability was correlated with the formation of new alpha-helices in the film. Measurements at 4 degreesC strongly reduced denaturation of PS II CC. The x-ray reflectivity studies indicated that the spread film consists of a single protein layer at the gas-water interface. Altogether, this study provides direct structural and molecular information on membrane proteins when spread in monolayers at the gas-water interface.     

Study of deposit and friction films of overbased calcium sulphonate by PM-IRRAS spectroscopy

This paper deals with the study of deposit and friction films of overbased calcium sulphonate diluted in mineral oil, on metal surfaces. The technique used for this work is Infrared Reflection Absorption Spectroscopy by Fourier Transform and Polarisation Modulation (PM-IRRAS or PM FTIR). The spectra obtained from this method contain only information on the absorption occurring in the immediate neighbourhood (⩽40 nm) of the metallic substrate and allow the average orientation for molecules adsorbed on metals to be deduced. This study shows that the adsorption of overbased calcium sulphonate on a steel surface leads to a preferential orientation of the sulphonate chains perpendicular to the surface and to a preferential orientation of the carbonate, the c axis being perpendicular to the surface. During friction, the sulphonate chains are ejected from the contact zone. We observed that the boundary film consists mainly of calcium carbonate, which crystallises into calcite.