Histone Methylation Marks on Circulating Nucleosomes as Novel Blood-Based Biomarker in Colorectal Cancer

Circulating nucleic acids (CNAs) are under investigation as a liquid biopsy in cancer as potential non-invasive biomarkers, as stable structure in circulation nucleosomes could be valuable sources for detection of cancer-specific alterations in histone modifications. Our interest is in histone methylation marks with a focus on colorectal cancer, one of the leading cancers respective the incidence and mortality. Our previous work included the analysis of trimethylations of lysine 9 on histone 3 (H3K9me3) and of lysine 20 on histone 4 (H4K20me3) by chromatin immuno- precipitation-related PCR in circulating nucleosomes. Here we asked whether global immunologic measurement of histone marks in circulation could be a suitable approach to show their potential as biomarkers. In addition to H3K9me3 and H4K20me3 we also measured H3K27me3 in plasma samples from CRC patients (n = 63) and cancer free individuals (n = 40) by ELISA-based methylation assays. Our results show that of three marks, the amounts of H3K27me3 (p = 0.04) and H4K20me3 (p < 0.001) were significantly lower in CRC patients than in healthy controls. For H3K9me3 similar amounts were measured in both groups. Areas under the curve (AUC) in receiver operating characteristic (ROC) curves indicating the power of CRC detection were 0.620 for H3K27me3, 0.715 for H4K20me3 and 0.769 for the combination of both markers. In conclusion, findings of this preliminary study reveal the potential of blood-based detection of CRC by quantification of histone methylation marks and the additive effect of the marker combination.     

The activity of acid phosphatase and its isoenzymes in patients with food poisonings

Changes in the activity of acid phosphatase (AP) and its isoenzymes (tartrate-insensitive AP and formalin-insensitive AP) were investigated in patients with food poisoning in the course of the disease. The activity of AP and its isoenzymes in the serum started to grow in early convalescence and reached maximum in late convalescence. Total activity of AP in food toxic infections consists primarily of the activity of its platelet fraction. AP activity may serve as an additional criterion to predict vascular platelet involvement of hemostasis.     

Mathematical boundary integral equation analysis of an embedded shell under dynamic excitations

A boundary integral equation method is presented for the analysis of a thin cylindrical shell embedded in an elastic half-space under axisymmetric excitations. By virtue of a set of ring-load Green's functions for the shell and a group of dynamic fundamental solutions for the semi-infinite medium, the structure–medium interaction problem of wave propagation is shown to be reducible to a set of coupled boundary integral equations. Through the analysis of an auxiliary pair of Cauchy integral equations, the singularities of the contact stress distributions arc rendered explicit. With a direct incorporation of such analytical features into the formulation, an effective computational procedure is developed which involves an interpolation of regular functions only. Typical results for the dynamic contact load distributions, displacements, and complex compliance functions are included as illustrations. In addition to furnishing quantities of direct engineering interest, this treatment is apt to be useful as a foundation for further rigorous as well as approximate developments for various related physical problems and boundary integral methods.     

A hyperheuristic approach to examination timetabling problems: benchmarks and a new problem from practice

Many researchers studying examination timetabling problems focus on either benchmark problems or problems from practice encountered in their institutions. Hyperheuristics are proposed as generic optimisation methods which explore the search space of heuristics rather than direct solutions. In the present study, the performance of tournament-based hyperheuristics for the exam timetabling problem are investigated. The target instances include both the Toronto and ITC 2007 benchmarks and the examination timetabling problem at KAHO Sint-Lieven (Ghent, Belgium). The Toronto and ITC 2007 benchmarks are post-enrolment-based examination timetabling problems, whereas the KAHO Sint-Lieven case is a curriculum-based examination timetabling problem. We drastically improve the previous (manually created) solution for the KAHO Sint-Lieven problem by generating a timetable that satisfies all the hard and soft constraints. We also make improvements on the best known results in the examination timetabling literature for seven out of thirteen instances for the To ronto benchmarks. The results are competitive with those of the finalists of the examination timetabling track of the International Timetabling Competition.     

The effect of two-layer cathode on the performance of the direct methanol fuel cell

To reduce the effect of methanol permeated from the anode, the structure of the cathode was modified from a single layer with Pt black catalyst to two-layer with PtRh black and Pt black catalysts, respectively. The current density of the direct methanol fuel cell (DMFC) using the two-layer cathode was improved to 228 mA/cm^-2 compared to that (180 mA/cm^-2) of the DMFC using the single layer cathode at 0.3 V and 303 K. From the cyclic voltammograms (CVs), it is indicated that the amount of adsorbates on the metal catalyst in the two-layer cathode is less than that of adsorbates in the single layer cathode after methanol test. In addition, the adsorbates were removed very rapidly by electrochemical oxidation from the two-layer cathode. It is suggested fromex situ X-ray absorption near edge structure analysis that the d-electron vacancy of Pt atom in the two-layer cathode is not changed by the methanol test. Thus, Pt is not covered with the adsorbates, which agrees well with the results of CV.     

Characterization of bimetallic NaY-supported Pt-Pd catalyst by EXAFS,TEM and TPR

NaY-supported bimetallic Pt-Pd catalysts have been studied by TEM, TPR and EXAFS. Small, randomly mixed particles are formed in the zeolite cages. When the Pt content is increased, a Pt core structure appears and the dispersion increases. Particle diameters are about 1–2 nm for bimetallic samples.     

Leakage current in a Si-based nanopore structure and its influence on noise characteristics

We have measured leakage current in a silicon substrate-based nanopore membrane device immersed in an aqueous environment which typically shows the current level of few nA. This current level is compared with the measured current density (400 nA/cm² at 1 V) from the pristine Si wafer (p-type, 10¹⁶/cm³ boron doping) indicating that the exposed Si surface in a nanopore membrane device acts as an electrochemical reaction site. The leakage current is drastically reduced from >10 nA to <100 pA at 1 V by the deposition of a dielectric layer to the Si-based nanopore membrane device. We also noted that the root-mean-square noise of the ionic current is also reduced from 38 to 28 pA in correlation with the reduction of leakage current, indicating that electrochemical reaction provides one of the major sources of noise.     

Physical agglomeration behavior in preparation of cellulose‐N‐methyl morpholine N‐oxide hydrate solutions by simple mixing

The different melting temperatures of N‐methyl morpholine N‐oxide (NMMO) hydrates in the cellulose–NMMO hydrate solution may be explained by the rather different crystal structures of NMMO hydrates, which are determined by the amount of the hydrates. The preparative process of cellulose–NMMO hydrate solution may result in cellulose structural change from cellulose I to cellulose II, depending on the amount of the hydrate. Mixtures of cellulose and NMMO hydrate in a blender was changed from the granules to slurry with increasing mixing time at 60–70°C, which is below the melting point of the NMMO hydrate. In the case of 15 wt % cellulose–NMMO hydrate granules, which were made by mixing for 20 min, the melting points of various NMMO hydrates were obtained as 77.8°C (n = 0.83), 70.2°C (n = 0.97), and 69.7°C (n = 1.23), respectively, depending on the hydrate number. However, the melting points of cellulose–NMMO hydrate slurry and solution were shifted lower than those of cellulose granules, while the mixing time of slurry and solution are 25 and 35 min, respectively. These melting behaviors indicate instantaneous liquefaction of the NMMO hydrate and the diffusion of the NMMO hydrate into cellulose during mixing in a blender. When cellulose was completely dissolved in NMMO hydrate, the crystal structure of cellulose showed only cellulose II structure. In the cellulose–NMMO products of granules or slurry obtained by high‐speed mixing, which is a new preparation method, they still retained the original cellulose I structure. © 2004 Wiley Periodicals, Inc. J Appl Polym Sci 93: 1687–1697, 2004