Semi-Supervised Deep Learning for Multi-Tissue Segmentation from Multi-Contrast MRI

Journal of Signal Processing Systems - Segmentation of thigh tissues (muscle, fat, inter-muscular adipose tissue (IMAT), bone, and bone marrow) from magnetic resonance imaging (MRI) scans is useful...     

Experimental and numerical studies on the determination of twist drill temperature in dry drilling: A new approach

In this paper, the influences of the spindle speed and feed rate on the drill temperature responses have been investigated. A new experimental approach was developed to measure drill temperature in drilling process. Drill temperatures were measured by inserting standard thermocouples through the coolant (oil) hole of TiAlN-coated carbide drills. Experimental parameters used in the study has based on Taguchi’s method. Experimental study was conducted by using two different workpiece materials, AISI 1040 steel and Al 7075-T651. The drill bit temperature was predicted using a numerical calculation with Third Wave AdvantEdge^TM Lagrangian based on explicit finite element analysis software. The results obtained from experimental study and finite element analyses (FEA) were compared. Good agreement between the measured and analyzed temperature results was found in dry drilling process.     

A microfluidic toolbox for cell fusion

Cellular fusion is a key process in many fields ranging from historical gene mapping studies and monoclonal antibody production, through to cell reprogramming. Traditional methodologies for cell fusion rely on the random pairing of different cell types and generally result in low and variable fusion efficiencies. These approaches become particularly limiting where substantial numbers of bespoke one‐to‐one fusions are required, for example, for in‐depth studies of nuclear reprogramming mechanisms. In recent years, microfluidic technologies have proven valuable in creating platforms where the manipulation of single cells is highly efficient, rapid and controllable. These technologies also allow the integration of different experimental steps and characterisation processes into a single platform. Although the application of microfluidic methodologies to cell fusion studies is promising, current technologies that rely on static trapping are limited both in terms of the overall number of fused cells produced and their experimental accessibility. Here we review some of the most exciting breakthroughs in core microfluidic technologies that will allow the creation of integrated platforms for controlled cell fusion at high throughput. © 2015 Society of Chemical Industry     

Performance evaluation of a submerged membrane bioreactor for the treatment of brackish oil and natural gas field produced water

Produced water, which is co-produced during oil and gas manufacturing, represents one of the largest sources of oily wastewaters. Therefore, treatment of this produced water may improve the economic viability and lead to a new source of water for beneficial use. In this study a submerged hollow fiber membrane bioreactor (MBR) has been studied experimentally for the treatment of brackish oil and natural gas field produced water. This type of wastewater is also characterized with relatively moderate to high amount of salt, oil and total petroleum hydrocarbons (TPH). However, the bacteria which are growing in conventional activated sludge and MBR cannot survive at these strict conditions, therefore acclimation of the bacteria is of vital importance. The performance of the biological system, membrane permeability, the rate and extent of TPH biodegradability have been investigated under different sludge age and F/M ratios. The results obtained by gas chromatography analyses showed that the MBR system could be very effective in the removal of TPH from produced water and a significant improvement in the effluent quality was achieved.     

Seismic microzonation of the historic peninsula of İstanbul

In this study, the geological and geotechnical conditions of old Istanbul (Fatih and Eminönü provinces) were investigated in detail and a seismic microzonation study was undertaken for this historical peninsula, which is the site of many ancient structures. Dynamic site response, liquefaction potential and slope stability analyses were carried out, based on field and laboratory tests and earthquake time histories computed with respect to probabilities of exceedance of 10 and 40% in 50 years. The output data obtained from the analyses were evaluated by GIS techniques, and ground shaking, liquefaction susceptibility and landslide hazard maps were prepared.     

GC–MS analysis of oxysterols and their formation in cultivated liver cells (HepG2)

Oxysterols play a key role in many (patho)physiological processes and they are potential biomarkers for oxidative stress in several diseases. Here we developed a rapid gas chromatographic-mass spectrometry-based method for the separation and quantification of 11 biologically relevant oxysterols bearing hydroxy, epoxy, and dihydroxy groups. Efficient chromatographic separation (resolution ≥ 1.9) was achieved using a medium polarity 35%-diphenyl/65%-dimethyl polysiloxane stationary phase material (30 m × 0.25 mm inner diameter and 0.25 μm film thickness). Based on thorough analysis of the fragmentation during electron ionization we developed a strategy to deduce structural information of the oxysterols. Optimized sample preparation includes (i) extraction with a mixture of n-hexane/iso-propanol, (ii) removal of cholesterol by solid phase extraction with unmodified silica, and (iii) trimethylsilylation. The method was successfully applied on the analysis of brain samples, showing consistent results with previous studies and a good intra- and interday precision of ≤20%. Finally, we used the method for the investigation of oxysterol formation during oxidative stress in HepG2 cells. Incubation with tert-butyl hydroperoxide led to a massive increase in free radical formed oxysterols (7-keto-chol > 7β-OH-chol >> 7α-OH-chol), while 24 h incubation with the glutathione peroxidase 4 inhibitor RSL3 showed no increase in oxidative stress based on the oxysterol pattern. Overall, the new method described here enables the robust analysis of a biologically meaningful pattern of oxysterols with high sensitivity and precision allowing us to gain new insights in the biological formation and role of oxysterols.     

Reliability analysis of the complex mode indicator function and Hilbert Transform techniques for operational modal analysis

This study presents application of the CMIF and the Hilbert Transform techniques onto simulated response data obtained using a numerical model of a typical school building from Turkey. White noise is added to the data in order to achieve a noise to signal ratio of 5%. 100 Monte Carlo analysis sequences are carried out and the modal parameters (the frequencies, the mode shapes and the damping ratios) are identified at each Monte Carlo run for both techniques. The results are compared with the identifications obtained from the simulated data using stochastic subspace based system identification technique. The overall results of the study show that the mode shapes are clearly identified the best by using the CMIF technique. The damping ratios are estimated better by using the stochastic subspace based system identification technique whereas the frequencies are best determined by the CMIF. The results also show that both the CMIF and the Hilbert Transform techniques are sensitive to the type of window used as well as the averaging and the decimation process. It is apparent that the CMIF technique is as robust as the frequently used stochastic subspace based system identification technique and can be confidently used for modal parameter estimation of stiff low to mid rise reinforced concrete structures.