Automatic ultrastructure segmentation of reconstructed cryoEM maps of icosahedral viruses.

We present an automatic algorithm to segment all the local and global asymmetric units of a three-dimensional density map of icosahedral viruses. This approach is readily applicable to the structural analysis of a broad range of virus structures that are reconstructed using cryo-electron microscopy (cryo-EM) technique. Our algorithm includes three major steps operating on the three dimensional density map: the detection of critical points of the volumetric density function, the detection of global and local symmetry axes, and, finally, the boundary segmentation of all the asymmetric units. We demonstrate the efficacy of our algorithm and report our results on several experimental volumetric datasets, consisting of both reconstructed cryo-EM molecular density maps taken from the European Bioinformatics Institute archive, as well our own synthetically generated (blurred) maps calculated from X-ray resolution molecular structural data taken from the Protein Data Bank.     

Carbohydrate content of potato (Solanum tuberosum L.) tubers treated with Isopropyl-N (3-chlorophenyl) carbamate under different storage conditions

Post harvest application of Isopropyl-N (3-chlorophenyl) carbamate considerably reduced the degradation of starch when potato tubers were stored in an evaporative cooling chamber. The starch degraded at a faster rate when tubers were kept under refrigerated and room storage conditions.     

Modeling of in situ monitored laser reflectance during MOCVD growth of HgCdTe

An effective way to in situ monitor the metalorganic chemical vapor deposition (MOCVD) of HgCdTe/CdTe/ZnTe on GaAs or GaAs/Si substrates is presented. Specular He-Ne laser reflectance was used to in situ monitor the growth rates, layer thickness, and morphology for each layer in the grown multilayer structure. In situ monitoring has enabled precise measurements of ZnTe nucleation and CdTe buffer layer thicknesses. Monitoring the constancy of reflectance during the thicker CdTe buffer growth where absorption in the CdTe reduces reflectance to just the surface component has led to optimum buffer growth ensuring good quality of subsequently grown HgCdTe. During the interdiffused multilayer process (IMP) HgCdTe growth, because multiple interfaces are present within the absorption length, a periodic reflectance signal is maintained throughout this growth cycle. A theoretical model was developed to extract IMP layer thicknesses from in situ recorded experimental data. For structures that required the growth of a larger band gap HgCdTe cap layer on top of a smaller band gap active layer, in situ monitored reflectance data allowed determination of alloy composition in the cap layer as well. Continuous monitoring of IMP parameters established the stability of growth conditions, translating into depth uniformity of the grown material, and allowed diagnosis of growth rate instabilities in terms of changes in the HgTe and CdTe parts of the IMP cycle. A unique advantage of in situ laser monitoring is the opportunity to perform “interactive” crystal growth, a development that is a key to real time MOCVD HgCdTe feedback growth control.     

Effect of coupling agents on thermal and electrical properties of mica/epoxy composites

The influence of 3-aminopropyltriethoxysilane, 3-glycidyloxypropyltrimethoxysilane, and neoalkoxytric(dioctyl pyrophosphato)zirconate on thermal expansion behavior, dielectric strength, and arc resistance of mica/epoxy composites has been investigated. The addition of mica up to 30% resulted in the reduction of thermal expansion with respect to neat resin. However, the coefficient of linear thermal expansion of 30% mica treated with aminosilane was the least among the various coupling agent-coated filler/epoxy composites. Mica (30%)/epoxy composites showed the highest dielectric strength values (26 kV/mm), but the highest arc resistance was obtained in zirconate-treated mica (30%)/epoxy composite. © 1995 John Wiley & Sons, Inc.     

Node overlap removal in clustered directed acyclic graphs

Graph drawing and visualization represent structural information as diagrams of abstract graphs and networks. An important subset of graphs is directed acyclic graphs (DAGs). This paper presents a new E-Spring algorithm, extended from the popular spring embedder model, which eliminates node overlaps in clustered DAGs. In this framework, nodes are modeled as non-uniform charged particles with weights, and a final drawing is derived by adjusting the positions of the nodes according to a combination of spring forces and repulsive forces derived from electrostatic forces between the nodes. The drawing process needs to reach a stable state when the average distances of separation between nodes are near optimal. We introduce a stopping condition for such a stable state, which reduces equilibrium distances between nodes and therefore results in a significantly reduced area for DAG visualization. It imposes an upper bound on the repulsive forces between nodes based on graph geometry. The algorithm employs node interleaving to eliminate any residual node overlaps. These new techniques have been validated by visualizing eBay buyer–seller relationships and has resulted in overall area reductions in the range of 45–79%.     

Nanoclays for polymer nanocomposites, paints, inks, greases and cosmetics formulations, drug delivery vehicle and waste water treatment

An overview of nanoclays or organically modified layered silicates (organoclays) is presented with emphasis placed on the use of nanoclays as the reinforcement phase in polymer matrices for preparation of polymer/layered silicates nanocomposites, rheological modifier for paints, inks and greases, drug delivery vehicle for controlled release of therapeutic agents, and nanoclays for industrial waste water as well as potable water treatment to make further step into green environment. A little amount of nanoclay can alter the entire properties of polymers, paints, inks and greases to a great extent by dispersing 1nm thick layered silicate throughout the matrices. The flexibility of interlayer spacing of layered silicates accommodates therapeutic agents which can later on be released to damaged cell. Because the release of drugs in drug-intercalated layered materials is controllable, these new materials have a great potential as a delivery host in the pharmaceutical field. The problem of clean water can be solved by treating industrial and municipal waste water with organoclays in combination with other sorbents like activated carbon and alum. Organoclays have proven to be superior to any other water treatment technology in applications where the water to be treated contains substantial amounts of oil and grease or humic acid.     

Segmented object manufacturing

Rapid Prototyping (RP) is a technology based on a “divide-and-conquer” strategy that enables automatic physical realization of a design without any special tooling. However, existing RP processes suffer from staircase defects since they are all based on 2.5-axis kinematics. To minimize the error due to staircase defects parts are normally built from very thin layers typically with thickness values of 0.010 to 0.300 mm. Therefore, hundreds of layers are required to produce a typical object making RP a slow and costly process. To overcome these limitations, a new RP process called Segmented Object Manufacturing (SOM) is proposed in this paper. SOM makes use of three-axis kinematics in conjunction with a novel slicing method. Slicing in SOM is based on certain visibility-based considerations and is independent of the part accuracy. Since only a few thick layers are used in the SOM technique, a part can be produced faster and cheaper with an accuracy comparable to that of CNC machining.