A Study of Integrated Document and Connection Caching in the WWW

Document caching and connection caching are extensively studied problems. In document caching, one has to maintain caches containing documents accessible in a network. In connection caching, one has to maintain a set of open network connections that handle data transfer. Previous work investigated these two problems separately while in practice the problems occur together: In order to load a document, one has to establish a connection between network nodes if the required connection is not already open. In this paper we present the first study that integrates document and connection caching. We first consider a very basic model in which all documents have the same size and the cost of loading a document or establishing a connection is equal to 1. We present deterministic and randomized online algorithms that achieve nearly optimal competitive ratios unless the size of the connection cache is extremely small. We then consider general settings where documents have varying sizes. We investigate a FAULT model in which the loading cost of a document is 1 as well as a BIT model in which the loading cost is equal to the size of the document.     

Combination of computational prescreening and experimental library construction can accelerate enzyme optimization by directed evolution

Chiral compounds can be produced efficiently by using biocatalysts. However, wild-type enzymes often do not meet the requirements of a production process, making optimization by rational design or directed evolution necessary. Here, we studied the lipase-catalyzed hydrolysis of the model substrate 1-(2-naphthyl)ethyl acetate both theoretically and experimentally. We found that a computational equivalent of alanine scanning mutagenesis based on QM/MM methodology can be applied to identify amino acid positions important for the activity of the enzyme. The theoretical results are consistent with concomitant experimental work using complete saturation mutagenesis and high-throughput screening of the target biocatalyst, a lipase from Bacillus subtilis. Both QM/MM-based calculations and molecular biology experiments identify histidine 76 as a residue that strongly affects the catalytic activity. The experiments demonstrate its important influence on enantioselectivity.     

Flow pattern measurement in a full scale silo containing iron ore

The flow pattern in a silo is important because it affects both the recovery of solids and the pressures on the silo wall during discharge. Wherever mass flow is not achieved, the boundary of the flow channel has significant implications for both the functional and structural design of the silo. Many techniques have been used for the study of flow patterns in model silos, but most cannot be used at full scale, and very few quality measurements at full scale have ever been made. This paper outlines a full scale experimental study in which the patterns of solids flow and the flow channel boundaries are reliably quantified.The full scale silo was specially designed, constructed and instrumented to exhibit funnel flow and to make observations of the solids flow pattern and the silo wall pressures. It had three outlets: one concentric, one fully eccentric and one in between. Three materials were used: iron ore pellets, slag fines and crushed basalt. This paper describes experiments involving iron ore pellets. The silo was seeded with radio frequency tags whose residence times were measured by detecting them on exit during discharge. The residence time data were studied to deduce the discharge flow pattern. This paper presents the results of three different flow pattern interpretation techniques: the best of them (mass-time relationships) is shown to give a very clear identification of the solids flow pattern and the flow channel boundary.     

Chemical inhibitors when timing is critical: a pharmacological concept for the maturation of T cell contacts

Cellular signal transduction proceeds through a complex network of molecular interactions and enzymatic activities. The timing of these molecular events is critical for the propagation of a signal and the generation of a specific cellular response. To define the timing of signalling events, we introduce the combination of high-resolution confocal microscopy with the application of small-molecule inhibitors at various stages of signal transduction in T cells. Inhibitors of Src-family tyrosine kinases and actin dynamics were employed to dissect the role of the lymphocyte-specific tyrosine kinase Lck in the formation and maintenance of T cell receptor/CD3-dependent contacts. Anti-CD3epsilon-coated coverslips served as a highly defined stimulus. The kinetics of the recruitment of the yellow fluorescent protein-tagged signalling protein ZAP-70 were detected by high-resolution confocal microscopy. The analysis revealed that at 5 min after receptor engagement, Lck activity was required for maintenance of contacts. In contrast, after 20 min of receptor engagement, the contacts were Lck-independent. The relevance of the timing of inhibitor application provides a pharmacological concept for the maturation of T cell-substrate contacts.     

Development of polarization ratio model for sea surface wind field retrieval from TerraSAR-X HH polarization data

In this article, the polarization ratio (PR) of TerraSAR-X (TS-X) vertical–vertical (VV) and horizontal–horizontal (HH) polarization data acquired over the ocean is investigated. Similar to the PR of C-band synthetic aperture radar (SAR), the PR of X-band SAR data also shows significant dependence on incidence angle. The normalized radar cross-section (NRCS) in VV polarization data is generally larger than that in HH polarization for incidence angles above 23°. Based on the analysis, two PR models proposed for C-band SAR were retuned using TS-X dual-polarization data. A new PR model, called X-PR hereafter, is proposed as well to convert the NRCS of TS-X in HH polarization to that in VV polarization. By using the developed geophysical model functions of XMOD1 and XMOD2 and the tuned PR models, the sea surface field is retrieved from the TS-X data in HH polarization. The comparisons with in situ buoy measurements show that the combination of XMOD2 and X-PR models yields a good retrieval with a root mean square error (RMSE) of 2.03 m s^–1 and scatter index (SI) of 22.4%. A further comparison with a high-resolution analysis wind model in the North Sea is also presented, which shows better agreement with RMSE of 1.76 m s^–1 and SI of 20.3%. We also find that the difference between the fitting of the X-PR model and the PR derived from TS-X dual-polarization data is close to a constant. By adding the constant to the X-PR model, the accuracy of HH polarization sea surface wind speed is further improved with the bias reduced by 0.3 m s^–1. A case acquired at the offshore wind farm in the East China Sea further demonstrates that the improvement tends to be more effective for incidence angles above 40°.