Automatic labeling of cerebral arteries in magnetic resonance angiography

Objectives

In order to introduce 4D flow magnetic resonance imaging (MRI) as a standard clinical instrument for studying the cerebrovascular system, new and faster postprocessing tools are necessary. The objective of this study was to construct and evaluate a method for automatic identification of individual cerebral arteries in a 4D flow MRI angiogram.

Materials and methods

Forty-six elderly individuals were investigated with 4D flow MRI. Fourteen main cerebral arteries were manually labeled and used to create a probabilistic atlas. An automatic atlas-based artery identification method (AAIM) was developed based on vascular-branch extraction and the atlas was used for identification. The method was evaluated by comparing automatic with manual identification in 4D flow MRI angiograms from 67 additional elderly individuals.

Results

Overall accuracy was 93 %, and internal carotid artery and middle cerebral artery labeling was 100 % accurate. Smaller and more distal arteries had lower accuracy; for posterior communicating arteries and vertebral arteries, accuracy was 70 and 89 %, respectively.

Conclusion

The AAIM enabled fast and fully automatic labeling of the main cerebral arteries. AAIM functionality provides the basis for creating an automatic and powerful method to analyze arterial cerebral blood flow in clinical routine.

     

Lentiviral-Induced Spinal Cord Gliomas in Rat Model

Intramedullary spinal cord tumors are a rare and understudied cancer with poor treatment options and prognosis. Our prior study used a combination of PDGF-B, HRAS, and p53 knockdown to induce the development of high-grade glioma in the spinal cords of minipigs. In this study, we evaluate the ability of each vector alone and combinations of vectors to produce high-grade spinal cord gliomas. Eight groups of rats (n = 8/group) underwent thoracolumbar laminectomy and injection of lentiviral vector in the lateral white matter of the spinal cord. Each group received a different combination of lentiviral vectors expressing PDGF-B, a constitutively active HRAS mutant, or shRNA targeting p53, or a control vector. All animals were monitored once per week for clinical deficits for 98 days. Tissues were harvested and analyzed using hematoxylin and eosin (H&E) and immunohistochemical (IHC) staining. Rats injected with PDGF-B+HRAS+sh-p53 (triple cocktail) exhibited statistically significant declines in all behavioral measures (Basso Beattie Bresnahan scoring, Tarlov scoring, weight, and survival rate) over time when compared to the control. Histologically, all groups except the control and those injected with sh-p53 displayed the development of tumors at the injection site, although there were differences in the rate of tumor growth and the histopathological features of the lesions between groups. Examination of immunohistochemistry revealed rats receiving triple cocktail displayed the largest and most significant increase in the Ki67 proliferation index and GFAP positivity than any other group. PDGF-B+HRAS also displayed a significant increase in the Ki67 proliferation index. Rats receiving PDGF-B alone and PDGF-B+ sh-p53 displayed more a significant increase in SOX2-positive staining than in any other group. We found that different vector combinations produced differing high-grade glioma models in rodents. The combination of all three vectors produced a model of high-grade glioma more efficiently and aggressively with respect to behavioral, physiological, and histological characteristics than the rest of the vector combinations. Thus, the present rat model of spinal cord glioma may potentially be used to evaluate therapeutic strategies in the future.     

A growth supplement for "fastidious germs"

A growth supplement for "fastidious germs" was produced at the Laboratory of Acute Respiratory Infections of "Pedro Kourí" Institute of Tropical Medicine. This supplement was studied by computerized optic spectrophotometry, and chemical composition was determined. The efficacy of this supplement for the culture of Haemophilus influenzae type b, was evidenced using 100 strains, and it was proven that it can be used in concentrations raging from 1 to 10%.     

Microstructure and the influence of spontaneous strain in LaCoO3, La0.8Sr0.2CoO3 and La0.8Ca0.2CoO3

Transmission Electron Microscopy has been conducted on rhombohedral perovskite oxides with composition LaCoO₃, La_0.8Sr_0.2CoO₃, and La_0.8Ca_0.2CoO₃. Thin foils prepared within the first weeks of sintering showed macroscopic strain and a very high defect density, which included fault-related superlattice structures. Samples prepared several months after sintering, showed no significant macroscopic strain and the main defect was found to be domains due to reflection twinning in the pseudo-cube plane. The behaviour is likely to be related to accomodation of spontaneous strain arising upon cooling of the material from the sintering temperature. The presence of twin domains illustrates the lowering of lattice symmetry as compared to the ideal cubic perovskite structure, and is relevant for explaining recent observations of ferroelastic behaviour of these materials.     

On the nano-size intergrowth of Sr4Fe6O13±δ and (Sr1?xLax)FeO3?δ phases in the mixed conductor Sr3.6La0.4Fe6Oz

The microstructures of mixed-conducting Sr₄Fe₆O_13±, and Sr_3.6La_0.4Fe₆O _z (nominal composition) have been studied by electron microscopy. The lanthanum free material shows a microstructure containing mainly Sr₄Fe₆O_13±, with some 5 vol% Sr_1–y La _y Fe₁₂O₁₉embedded as micron-size inclusions. The lanthanum-containing material revealed a significantly different microstructure consisting of 20 vol% micron-size Sr_1–y La _y Fe₁₂O₁₉embedded in 40 vol% (Sr_0.85La_0.15)FeO_3–tetragonal perovskite, and 40 vol% of plate-shaped nano-scale intergrowths between (Sr_1–x La _x )FeO_3–and Sr₄Fe₆O_13±phases. Domains with dimensions of 20–50 nm are observed in the tetragonal perovskite when viewed along its fourfold axis. From compositional analysis it is concluded that there is little or no solubility of La in the Sr₄Fe₆O_13±phase. The observed microstructure is important input in explaining the significant effect of La addition on the transport properties of Sr₄Fe₆O_13±materials.     

Rapid,cost-effective DNA quantification via a visually-detectable aggregation of superparamagnetic silica-magnetite nanoparticles

DNA and silica-coated magnetic particles entangle and form visible aggregates under chaotropic conditions with a rotating magnetic field, in a manner that enables quantification of DNA by image analysis. As a means of exploring the mechanism of this DNA quantitation assay, nanoscale SiO2-coated Fe304 （Fe3O4@SiO2） particles are synthesized via a solvothermal method. Characterization of the particles defines them to be -200 nm in diameter with a large surface area （141.89 m2/g）, possessing superparamagnetic properties and exhibiting high saturation magnetization （38 emu/g）. The synthesized Fe3O4@SiO2 nanoparticles are exploited in the DNA quantification assay and, as predicted, the nanoparticles provide better sensitivity than commercial microscale Dynabeads for quantifying DNA, with a detection limit of 4 kilobase-pair fragments of human DNA. Their utility is proven using nanoparticle DNA quantification to guide efficient polymerase chain reaction （PCR） amplification of short tandem repeat loci for human identification.     

Mobile Technology and Action Teams: Assessing BlackBerry Use in Law Enforcement Units

This research explores the effectiveness of mobile wireless information and communication technologies (ICTs) for law enforcement teams. Law enforcement teams require real-time information access and rapid communication to diagnose potential threats, analyze problems, and coordinate actions. To meet these needs, two U.S. law enforcement organizations implemented pilot trials of RIM BlackBerries for approximately 650 squad members. These trials provided an opportunity to assess acceptance, use, and perceived performance benefits of the technology as well as factors influencing these outcomes. Data were collected from semi-structured interviews, user surveys, and system logs. Although the work teams and tasks were similar in the two organizations, the outcomes, while generally positive, differed markedly, with much greater acceptance and use in one organization versus the other. Results show how technical factors, functionality, and implementation processes account for these differences and illustrate how mobile wireless ICT can meet the unique needs for information access and communication in investigative action teams. We expect that these findings will generalize beyond action teams as more mobile workers in a variety of domains adopt wireless handheld technologies.     

Nitrogen balance in a stockless organic cropping system with different strategies for internal N cycling via residual biomass

A major future challenge in agriculture is to reduce the use of new reactive nitrogen (N) while maintaining or increasing productivity without causing a negative N balance in cropping systems. We investigated if strategic management of internal biomass N resources (green manure ley, crop residues and cover crops) within an organic crop rotation of six main crops, could maintain the N balance. Two years of measurements in the field experiment in southern Sweden were used to compare three biomass management strategies: anaerobic digestion of ensiled biomass and application of the digestate to the non-legume crops (AD), biomass redistribution as silage to non-legume crops (BR), and leaving the biomass in situ (IS). Neither aboveground crop N content from soil, nor the proportion of N derived from N₂ fixation in legumes were influenced by biomass management treatment. On the other hand, the allocation of N-rich silage and digestate to non-legume crops resulted in higher N₂ fixation in AD and BR (57 and 58 kg ha^?1 year^?1), compared to IS (33 kg ha^?1 year^?1) in the second study year. The N balance ranged between ??9.9 and 24 kg N ha^?1, with more positive budgets in AD and BR than in IS. The storage of biomass for reallocation in spring led to an increasing accumulation of N in the BR and AD systems from one year to another. These strategies also provide an opportunity to supply the crop with the N when most needed, thereby potentially decreasing the risk of N losses during winter.     

A study of the ice crystals in vacuum-packed salmon fillets (Salmon salar) during superchilling process and following storage

The aim of this work was to study the microstructure of vacuum-packed salmon fillets superchilled in an impingement freezer at −30 °C (air temperature) and 227 W/m² K (surface heat transfer coefficient, SHTC) for 2.1 min prior to storage at a superchilling storage temperature of −1.7 ± 0.3 °C for 28 days. The microstructure of vacuum-packed salmon fillets were analysed at the surface, mid-centre and centre layers. Significant differences were observed between the ice crystals formed at the surface, mid-centre and centre layers. The size of ice crystals at the centre of the superchilled fillets was 3 times larger than those at the surface layer. Significant differences were observed between the size of ice crystals formed during the superchilling process and following storage. The results further indicated that, after temperature equalisation (1 day of storage) the growth of the intracellular ice crystal was not significant at (P < 0.05) at any storage time.