The crystal structure of the immunity protein of colicin E7 suggests a possible colicin-interacting surface

The immunity protein of colicin E7 (ImmE7) can bind specifically to the DNase-type colicin E7 and inhibit its bactericidal activity. Here we report the 1.8-angstrom crystal structure of the ImmE7 protein. This is the first x-ray structure determined in the superfamily of colicin immunity proteins. The ImmE7 protein consists of four antiparallel alpha-helices, folded in a topology similar to the architecture of a four-helix bundle structure. A region rich in acidic residues is identified. This negatively charged area has the greatest variability within the family of DNase-type immunity proteins; thus, it seems likely that this area is involved in specific binding to colicin. Based on structural, genetic, and kinetic data, we suggest that all the DNase-type immunity proteins, as well as colicins, share a "homologous-structural framework" and that specific interaction between a colicin and its cognate immunity protein relies upon how well these two proteins' charged residues match on the interaction surface, thus leading to specific immunity of the colicin.     

On The Approximation Capability of Neural Networks ‐ Dynamic System Modeling and Control

This paper discusses issues related to the approximation capability of neural networks in modeling and control. We show that neural networks are universal models and universal controllers for a class of nonlinear dynamic systems. That is, for a given dynamic system, there exists a neural network which can model the system to any degree of accuracy over time. Moreover, if the system to be controlled is stabilized by a continuous controller, then there exists a neural network which can approximate the controller such that the system controlled by the neural network is also stabilized with a given bound of output error.     

MicroRNA-155 Mediates Augmented CD40 Expression in Bone Marrow Derived Plasmacytoid Dendritic Cells in Symptomatic Lupus-Prone NZB/W F1 Mice

Systemic lupus erythematosus (SLE) is a chronic multi-organ autoimmune disease characterized by hyperactivated immune responses to self-antigens and persistent systemic inflammation. Previously, we reported abnormalities in circulating and bone marrow (BM)-derived plasmacytoid dendritic cells (pDCs) from SLE patients. Here, we aim to seek for potential regulators that mediate functional aberrations of pDCs in SLE. BM-derived pDCs from NZB/W F1 mice before and after the disease onset were compared for toll-like receptor (TLR) induced responses and microRNA profile changes. While pDCs derived from symptomatic mice were phenotypically comparable to pre-symptomatic ones, functionally they exhibited hypersensitivity to TLR7 but not TLR9 stimulation, as represented by the elevated upregulation of CD40, CD86 and MHC class II molecules upon R837 stimulation. Upregulated induction of miR-155 in symptomatic pDCs following TLR7 stimulation was observed. Transfection of miR-155 mimics in pre-symptomatic pDCs induced an augmented expression of Cd40, which is consistent with the increased CD40 expression in symptomatic pDCs. Overall, our results provide evidence for miR-155-mediated regulation in pDC functional abnormalities in SLE. Findings from this study contribute to a better understanding of SLE pathogenesis and ignite future interests in evaluating the molecular regulation in autoimmunity.     

The effectiveness of early endoscopy for upper gastrointestinal hemorrhage: a community-based analysis

OBJECTIVES: The effectiveness of upper endoscopy in unselected patients with upper gastrointestinal hemorrhage has not been well studied. This study was undertaken to identify factors associated with the performance of early endoscopy (ie, within 1 day of hospitalization) and, after adjusting for these factors, to determine associations between early endoscopy and in-hospital mortality, length of stay, and performance of surgery. METHODS: Subjects in this observational cohort study were 3,801 consecutive admissions with upper gastrointestinal hemorrhage to 30 hospitals in a large metropolitan region. Demographic and clinical data were abstracted from hospital records. A multivariable model based on factors that potentially could relate to the decision to perform endoscopy was developed to determine the propensity (0 to 100%) for early endoscopy in each patient. RESULTS: Early endoscopy was performed in 2,240 patients (59%), and although it was not associated with mortality after adjusting for severity of illness among all patients, it was associated with a higher risk of death for patients in the lowest propensity group. Early endoscopy was associated with a lower likelihood of upper gastrointestinal surgery in all patients and in the two highest propensity groups and with a shorter length of stay in the entire cohort and in all subgroups. CONCLUSIONS: In the absence of specific contraindications, early endoscopy should be considered because of associated reductions in length of stay and surgical intervention. Further studies are needed to identify subgroups in whom the procedure may be associated with adverse effects on survival.     

The Effects of Transmitter/Receiver Clock Time-Base Instability on Coherent Communication System Performance

The purpose of this paper is to present a model and associated analysis of the deleterious effects which both transmitter and receiver data clock time-base instability have on bit-error probability. The types of time-base instability modeled and analyzed include what is commonly referred to as bit jitter (epoch jitter), bit-jitter rate (time interval jitter), and data asymmetry. The biterror probability is determined as a function of the statistical characteristics of the time-base instability, the data-transition density, the signal-to-noise ratio in the bit-rate bandwidth and the mechanizations of both the data-bit detector and bit synchronizer. The latter is manifested through the bit synchronizer's natural frequency and loop-damping parameters. Numerical results which indicate the sensitivity of the system bit-error rate to various parameters of the model are provided.     

Metamorphic Heterostructure InP/GaAsSb/InP HBTs on GaAs Substrates by MOCVD

Good-quality metamorphic InP buffer layers have been successfully grown on GaAs substrates by metal-organic chemical vapor deposition. Characterization by atomic force microscope, transmission electron microscopy, high-resolution X-ray diffraction, and Hall measurements indicated that the layers are of high crystalline quality, good mobility, and excellent surface morphology. On this buffer, we demonstrated the first metamorphic InP/GaAsSb/InP double heterojunction bipolar transistors (DHBTs) with good material quality and device performance. Metamorphic DHBTs showed direct-current and radio-frequency characteristics that are comparable to those grown on lattice-matched InP substrates.     

PARTICULATE MATTER EXPOSURES TO COMMUTERS IN HONG KONG

Measurements of panicle number concentrations in different vehicles (tram, Mass Transit Railway, and air-conditioned and non air-conditioned franchisee) buses) were carried out from July 1 to November 1, 1994, in Hong Kong. A total of 320 samples in 14 days were collected for four count median diameters (0.3, 0,5, 5.0, and 10.0 um). The total particle number concentrations of airborne paniculate matter exposed to commuters varied from 3.61E6 to 7.68E7 ft for particle diameter 0.3 um or greater. The concentrations were much higher, from 4 to 16 times, than those (8.02E5 to 4.60E6 ft ) in rural areas (at the seaside near Hong Kong University of Science Technology), but the concentrations in non air-conditioned transportation (trams and franchised buses) were closer to those in the streets. It was found that the number concentrations of fine particles (0.3 to 5 mm) were relatively constant, and the fine particles could not be filtered by the air-conditioners used.     

Possible Sampling Artifact in Real Time Particle Size Distributions Related to Sampling Rate

The availability of high time-resolution (1 s full spectrum scan) particle sizers permitted atmospheric researchers to scrutinize the characteristics of ultrafine particles in rapidly varying (perhaps, random) high concentration environments such as roadside, on-road, and tunnels. These data also revealed possible artifacts associated with the slower (～ 30 s or more) scanning sizers when used in this kind of environment. This study discusses sampling rate artifact problems based on simulations using 1 s Engine Exhaust Particle Sizer data taken on a mobile platform.     

Theoretical studies of CO hydrogenation to methanol over Cu, Pd, and Pt metals

Theoretical studies of CO hydrogenation to methanol over Cu, Pd, and Pt metals have been carried out using a quasi‐relativistic density‐functional method. The metal surface is simulated by a M₁₀ cluster model. Reaction energies for the elementary steps involved are determined. The activation energies are estimated by the analytic BOC‐MP formula. The results support that these metals are active in CO hydrogenation to methanol. The rate‐determining steps are shown to be different for the metals. The highest activation energies of reaction on the metals fall in the order Cu < Pd < Pt, which corresponds to the order of the catalytic activities of the metals in CO hydrogenation. This revised version was published online in July 2006 with corrections to the Cover Date.     

A novel role of ImmE7 in the autoregulatory expression of the ColE7 operon and identification of possible RNase active sites in the crystal structure of dimeric ImmE7

Site-specific cleavage of mRNA has been identified in vivo for the polycistronic colicin E7 operon (ColE7), which occurs between G and A nucleotides located at the Asp52 codon (GAT) of the immunity gene (ceiE7). In vitro, this specific cleavage occurs only in the presence of the ceiE7 gene product (ImmE7). The crystal structure of dimeric ImmE7 has been determined at 1.8 A resolution by X-ray crystallographic analysis. We found that several residues located at the interface of dimeric ImmE7 bear surprising resemblance to the active sites of some RNases. These results suggest that dimeric ImmE7 may possess a novel RNase activity that cleaves its own mRNA at a specific site and thus autoregulates translational expression of the downstream celE7 gene as well as degradation of the upstream ceaE7 mRNA.