Identification and enzymatic profiles of the predominant lactic acid bacteria isolated from soft‐variety Chhurpi,a traditional cheese typical of the Sikkim Himalayas

Abstract

This paper is the first report on the microbial population and predominant lactic acid bacteria (LAB) of two soft‐varieties (mild and strong flavoured) of chhurpi., a traditional cheese product of the Sikkim Himalayas. The enzymatic profiles and percentage hydrophobicity (as one criterion of potential adhesion capability) of the predominant LAB were also studied. The LAB, yeasts and viable mesophilic microbial numbers ranged from 7.6–7.9, 7.0–7.4 and 7.7–8.0 log₁₀ cfu/g respectively. The predominant LAB were identified as Lactobacillus plantarum, Lb. curvatus, Lb. fermentum, Lb. paracasei subsp. pseudoplcmtarum and Leuconostoc mesenteroides. They produced a wide spectrum of enzymes and also exhibited similar patterns of enzymatic activity between species. In comparison to the peptidases, they showed relatively weak esterase and lipase activities. No proteinase activity was detected. Most strains had a high degree of hydrophobicity. The results are discussed in relation to the possible role of the strains in food processing.     

Identification of yeast strains isolated from marcha in Sikkim, a microbial starter for amylolytic fermentation

Marcha or murcha is a traditional amylolytic starter used to produce sweet-sour alcoholic drinks, commonly called jaanr in the Himalayan regions of India, Nepal, Bhutan, and Tibet (China). The aim of this study was to examine the microflora of marcha collected from Sikkim in India, focusing on yeast flora and their roles. Twenty yeast strains were isolated from six samples of marcha and identified by genetic and phenotypic methods. They were first classified into four groups (Group I, II, III, and IV) based on physiological features using an API test. Phylogenetic, morphological, and physiological characterization identified the isolates as Saccharomyces bayanus (Group I); Candida glabrata (Group II); Pichia anomala (Group III); and Saccharomycopsis fibuligera, Saccharomycopsis capsularis, and Pichia burtonii (Group IV). Among them, the Group I, II, and III strains produced ethanol. The isolates of Group IV had high amylolytic activity. Because all marcha samples tested contained both starch degraders and ethanol producers, it was hypothesized that all four groups of yeast (Group I, II, III, and IV) contribute to starch-based alcohol fermentation.     

Lactic acid bacteria isolated from ethnic preserved meat products of the Western Himalayas

We used culture- and molecular-biology-based methods to investigate the diversity of lactic acid bacteria (LAB) in the ethnic chevon (goat) meat products chartayshya, jamma and arjia of the Western Himalayas. In six chartayshya, six jamma and four arjia samples, LAB were the predominant microbial component involved in the fermentation of these samples, and the total LAB population in arjia (7.8 ± 0.1 log cfu g⁻¹; mean ± SD) was significantly higher (P < 0.05) than in chartayshya (6.9 ± 0.1 log cfu g⁻¹) and jamma (7.5 ± 0.1 log cfu g⁻¹). We identified 53 LAB samples by 16S rRNA and phenylalanyl-tRNA synthase (pheS) genes sequencing. The LAB isolates were identified as Enterococcus durans, Enterococcus faecalis, Enterococcus faecium, Enterococcus hirae, Leuconostoc citreum, Leuconostoc mesenteroides, Pediococcus pentosaceus, and Weissella cibaria. These results revealed that there is a high level of diversity of LAB in the Himalayan ethnic preserved meat products.     

Probing the photoresponse of individual Nb2O5 nanowires with global and localized laser beam irradiation

Photoresponse of isolated Nb(2)O(5) nanowires (NW) padded with platinum (Pt) at both ends were studied with global irradiation by a laser beam and localized irradiation using a focused laser beam. Global laser irradiation on individual NW in ambient and vacuum conditions revealed photocurrent contributions with different time characteristics (rapid and slowly varying components) arising from defect level excitations, thermal heating effect, surface states and NW-Pt contacts. With a spot size of < 1 μm, localized irradiation highlighted the fact that the measured photocurrent in this single NW device (with and without applied bias) depended sensitively on the photoresponse at the NW-Pt contacts. At applied bias, unidirectional photocurrent was observed and higher photocurrent was achieved with localized laser irradiation at reverse-biased NW-Pt contacts. At zero bias, the opposite polarity of photocurrents was detected when the two NW-Pt contacts were subjected to focused laser beam irradiation. A reduced Schottky barrier/width resulting from an increase in charge carriers and thermoelectric effects arising from the localized thermal heating due to focused laser beam irradiation were proposed as the mechanisms dictating the photocurrent at the NW-Pt interface. Comparison of photocurrents generated upon global and localized laser irradiation showed that the main contribution to the photocurrent was largely due to the photoresponse of the NW-Pt contacts.     

Phenotypic and genotypic identification of lactic acid bacteria isolated from ethnic fermented bamboo tender shoots of North East India

Mesu, soidon, soibum and soijim are ethnic fermented bamboo tender shoot products prepared by the people in North East India. Microbiological analysis of mesu, soidon, soibum and soijim showed the population dominated by lactic acid bacteria (LAB) ranging up to 10(8) cfu g(-1). The phenotypic characterisation of predominant LAB isolated from the fermented bamboo shoot products was based on general morphology, physiological tests, API and Biolog systems. The genotypic characterisation of LAB was based on RAPD-PCR, rep PCR, species-specific PCR techniques, 16S rRNA gene sequencing and DNA-DNA hybridisation. Predominant functional LAB strains associated with the fermented bamboo shoot products were identified as Lactobacillus brevis, Lb. plantarum, Lb. curvatus, Pediococcus pentosaceus, Leuconostoc mesenteroides subsp. mesenteroides, Leuc. fallax, Leuc. lactis, Leuc. citreum and Enterococcus durans.     

Lactic Acid Bacteria Isolated from Indigenous Fermented Bamboo Products of Arunachal Pradesh in India and Their Functionality

Ekung, eup and hirring are some common indigenous fermented bamboo products of Northeast India. We have isolated, characterized, and identified the predominant lactic acid bacteria (LAB) from 44 samples of ekung, eup, and hirring and studied their technological properties. The phenotypic characterizations of LAB isolates were based on physiological, biochemical tests and API kits, and were identified as Lactobacillus plantarum, L. brevis, L. casei, L. fermentum, Lactococcus lactis, and Tetragenococcus halophilus. Technological properties of LAB such as acidifying capacity, antimicrobial activities, degradation of phytic acid and oligosaccharides, bile-salt tolerance, enzymatic activities, biogenic amines production, and degree of hydrophobicity also were studied. This study showed that strains of LAB played important roles by their functional properties related to acidifying capacity, degradation of antinutritive factors, tolerance to bile-salt, wide enzymatic activities, and nonproducers of biogenic amines. Understanding the biological and biochemical basis of indigenous knowledge of the ethnic people of Northeast India for production of nonperishable bamboo shoots by lactic acid fermentation has merit. It helps to develop both low-cost functional foods, and understand the functionality of microbial diversity. Some of the LAB strains possess functional properties, which render them interesting candidates for use as LAB starter cultures.     

Phenotypic identification and technological properties of lactic acid bacteria isolated from traditionally processed fish products of the Eastern Himalayas

Sukako maacha, gnuchi, sidra and sukuti are traditional smoked and sun-dried fish products of the Eastern Himalayan regions of Nepal and India. A total of 40 samples of sukako maacha (14), gnuchi (6), sidra (10) and sukuti (10) were collected and were analysed for microbial load. Population of lactic acid bacteria (LAB) as well as aerobic mesophilic counts ranged from 4.7-8.3 to 5.1-8.5 log cfu g(-1), respectively. A total of 189 strains of LAB were isolated from sukako maacha, gnuchi, sidra and sukuti samples, out of which 171 strains were cocci and 15 strains, were heterofermentative lactobacilli. LAB were identified on the basis of phenotypic characters including API system as Lactococcus lactis subsp. cremoris, Lactococcus lactis subsp. lactis, Lactococcus plantarum, Leuconostoc mesenteroides, Enterococcus faecium, Enterococcus faecalis, Pediococcus pentosaceus and Weissella confusa. LAB strains produced a wide spectrum of enzymes. Some strains of LAB showed antagonistic properties against pathogenic strains. None of the strains produced biogenic amines in the method applied. This paper is the first report on the microbial composition, mostly lactic acid bacteria, of traditionally processed fish products of Eastern Himalayas.     

Tackling representation,annotation and classification challenges for temporal knowledge base population

Temporal Information Extraction (TIE) plays an important role in many natural language processing and database applications. Temporal slot filling (TSF) is a new and ambitious TIE task prepared for the knowledge base population (KBP2011) track of NIST Text Analysis Conference. TSF requires systems to discover temporally bound facts about entities and their attributes in order to populate a structured knowledge base. In this paper, we will provide an overview of the unique challenges of this new task and our novel approaches to address these challenges. We present challenges from three perspectives: (1) Temporal information representation: We will review the relevant linguistic semantic theories of temporal information and their limitations, motivating the need to develop a new (4-tuple) representation framework for the task. (2) Annotation acquisition: The lack of substantial labeled training data for supervised learning is a limiting factor in the design of TSF systems. Our work examines the use of multi-class logistic regression methods to improve the labeling quality of training data obtained by distant supervision. (3) Temporal information classification: Another key challenge lies in capturing relations between salient text elements separated by a long context. We develop two approaches for temporal classification and combine them through cross-document aggregation: a flat approach that uses lexical context and shallow dependency features and a structured approach that captures long syntactic contexts by using a dependency path kernel tailored for this task. Experimental results demonstrated that our annotation enhancement approach dramatically increased the speed of the training procedure (by almost 100 times), and that the flat and structured classification approaches were complementary, together yielding a state-of-the-art TSF system.     

On the interplay of cell thickness and optimum period of silicon thin‐film solar cells: light trapping and plasmonic losses

Light trapping and photon management in honeycomb‐textured microcrystalline silicon solar cells are investigated experimentally and by modeling of the manufacturing process and the optical wave propagation. The solar cells on honeycomb‐textured substrates exhibit short circuit current densities exceeding 30 mA/cm² and energy conversion efficiencies of up to 11.0%. By controlling the fabrication process, the period and height of the honeycomb‐textured substrates are varied. The influence of the honeycomb substrate morphology on the interfaces of the individual solar cell layers and the quantum efficiency is determined. The optical wave propagation is calculated using 3D finite difference time domain simulations. A very good agreement between the optical simulation and experimental results is obtained. Strategies are discussed on how to increase the short circuit current density beyond 30 mA/cm². In particular, the influence of plasmonic losses of the textured silver (Ag) reflector on the short circuit current and quantum efficiency of the solar cell is discussed. Finally, solar cell structures with reduced plasmonic losses are proposed. Copyright © 2015 John Wiley & Sons, Ltd.     

A simple and general route for monofunctionalization of fluorescent and magnetic nanoparticles using peptides

Nanoparticles are now utilized in many diverse biological and medical applications. Despite this, it remains challenging to tailor their surface for specific molecular targeting while maintaining high biocompatibility. To address this problem, we evaluate a phytochelatin-related peptide surface coating to produce functional and biocompatible nanoparticles (NPs) based on fluorescent InP/ZnS and CdSe/ZnS or superparamagnetic FePt and Fe(3)O(4). Using a combination of transmission electron microscopy, size-exclusion chromatography and gel electrophoresis (GE), we demonstrate the excellent colloidal properties of the peptide-coated NPs (pNPs) and the compact nature of the coating (～4?nm thickness). We develop a simple protocol for the monofunctionalization of the pNPs with targeting biomolecules, by combining covalent conjugation with GE purification. We then employ functionalized InP/ZnS pNPs in a live-cell, single-molecule imaging application to specifically target and detect individual proteins in the cell membrane. These findings showcase the versatility of the peptides for preparing compact NPs of various compositions and sizes, which are easily functionalized, and suitable for a broad range of biomedical applications.