A machine learning system for identifying transmembrane domains from amino acid sequences

We present our machine learning system, that uses inductive logic programming techniques to learn how to identify transmembrane domains from amino acid sequences. Our system facilitates the use of operators such as ‘contains’, that act on entire sequences, rather than on individual elements of a sequence. The prediction accuracy of our new system is around 93%, and this compares favourably with earlier results. This work was carried out with the support of a research grant from ISIS, Fujitsu Laboratories.     

电阻-时间线性转换电路

基于电阻的传感器,如应力规和压阻器件,常用于测量多种物理参数.对于使用数字处理器或微控制器进行数据采集和信号处理的设备来说,传感器的响应必须表现为一种适合于转换成数字格式的形式.把这类传感器的电阻变化转换成一个与之成比例的频率或时间间隔是可取的,所以你就能用一个计数器或定时器来方便地得到数字形式的输出信号.图1所示电路把传感器的电阻RS线性地转换成与之成比例的时间间隔.这一电路实际上是一个张驰振荡器,由一个电流源、一个桥式放大器、一个比较器和一个触发器组成.电流IS分成两路,分别通过R1和R2,就如同这两个电阻并联在一起一样.假定运算放大器是理想放大器,则当RX(R4+RS)大于R1R3/R2时,该电路就起一个振荡器的作用.     

FA composition and regiospecific analysis of Acer saccharum (sugar maple tree) and Acer saccharinum (silver maple tree) seed oils

GC analysis was performed to determine regiospecific distribution and FA composition in seed oils of the Aceraceae species, Acer saccharum and A. saccharinum. The oil content in the seeds was low at 5.0% in A. saccharum and 5.8% in A. saccharinum, and the main FA were linoleic (30.8 and 29.4%), oleic (21.3 and 27.6%), palmitic (10.1 and 10.5%), and cis-vaccenic (9.4 and 7.9%) acids, respectively. In addition, both oils contained long-chain monoenes of the n−9 and n−7 groups, including 11-eicosenoic, 13-docosenoic, 15-tetracosenoic, 13-eicosenoic, and 15-docosenoic acids, whereas γ-linolenic acid accounted for 0.8% of total FA in A. saccharum, and 0.5% in A. saccharinum. Regiospecific analysis, performed using the methodology of dibutyroyl derivatives of MAG, indicated that linoleic, oleic, and linolenic acids were mainly esterified at the internal position of TAG in both seed oils, whereas long-chain monoenes of the n−7 group were almost exclusively esterified on the external positions.     

Internet Studies and Development Discourses: The Cases of China and India

This paper investigates Internet studies in two leading developing countries (i.e. China and India) and finds that the Chinese scholarly community relies on the discourse of liberation from the state as a form of critique, whereas Indian Internet studies question the discourse of modernization to contemplate about the success and failure factors of information and communication technologies in development. The difference generally reflects the academic responses to the development discourses embraced by the two governments. We suggest that Internet studies should not only respond to the realities but also transcend the contextual constraints to direct attention to the often neglected dimensions of development, which are to make actual impacts through allowing the people and the communities to define their own development discourses as well as building research institutions that are oriented to influence policy-making.     

Investigating Modern‐Day Talaria: Mobile Phones and the Mobility‐Impaired in Singapore

Revisiting the medical and social models of disability, this study adopted the integrated biopsychosocial approach to examine experiences of 25 mobility‐impaired respondents in Singapore with using mobile phones. We found that mobile phones provided respondents a greater degree of mobility, a sense of control, and opportunities to escape the stigma of disability, thus challenging the boundaries between the able‐bodied and the disabled. Mobile phone appropriation allowed the management of personal identities and social networks, leading to a sense of empowerment. However, mobile phone usage might act as a double‐edged sword for disabled people, creating mobile dependencies and a spatial narrowing of social connections. Theoretical and practical implications are discussed.     

Foley catheters functionalised with a synergistic combination of antibiotics and silver nanoparticles resist biofilm formation

Foley catheters are inevitable in health care unit. Pathogens colonise and form biofilm on catheter causing catheter‐associated urinary tract infection. Therefore, the authors aimed to functionalise catheter to resist biofilm formation. The authors impregnated urinary catheters with a synergistic combination of antibiotics and silver nanoparticles (SNPs) to evaluate antibiofilm efficacy in vitro and in vivo. SNPs were synthesised using Spirulina platensis. Synergy between the SNPs and antibiotics was determined by the checker‐board method. In vivo efficacy of the functionalised catheters was assessed in mice. Liver and kidney function tests of mice were performed. The in vitro anti‐adherence activity of the functionalised catheters was evaluated after 2 years. Nanoparticle sizes were 42–75 nm. Synergistic activity was observed among SNPs (2 µg/ml), amikacin (6.25 µg/ml), and nitrofurantoin (31.25 µg/ml). In mice, catheters functionalised with combinations of antibiotics and SNPs exhibited no colonisation until Day 14. Blood, liver, and kidney tests were normal. After 2 years, catheters functionalised with antibiotics exhibited 25% inhibition of bacterial adhesion, and catheters functionalised with the nanoparticle‐antibiotic combination exhibited 90% inhibition. Impregnation of urinary catheters with a synergistic combination of antibiotics and SNPs is an efficient and promising method for preventing biofilm formation.Inspec keywords: catheters, drugs, silver, nanoparticles, nanomedicine, liver, kidney, blood, microorganisms, adhesion, biomechanics, cellular biophysicsOther keywords: Foley catheters, synergistic nanoparticle‐antibiotics combination, silver nanoparticles, biofilm formation resitance, health care unit, pathogens, urinary tract infection, SNP, Spirulina platensis, checker‐board method, liver function, kidney function, vitro antiadherence activity, amikacin, nitrofurantoin, blood, bacterial adhesion, size 42 nm to 75 nm, Ag     

Dynamic optimal experimental design yields marginal improvement over steady‐state results for computational maximisation of regulatory T‐cell induction in ex vivo culture

The isolation of T cells, followed by differentiation into Regulatory T cells (Tregs), and re‐transplantation into the body has been proposed as a therapeutic option for inflammatory bowel disease. A key requirement for making this a viable therapeutic option is the generation of a large population of Tregs. However, cytokines in the local microenvironment can impact the yield of Tregs during differentiation. As such, experimental design is an essential part of evaluating the importance of different cytokine concentrations for Treg differentiation. However, currently only single, constant concentrations of the cytokines have been investigated. This work addresses this point by performing experimental design in silico which seeks to maximize the predicted induction of Tregs relative to Th17 cells, by selecting an optimal input function for the concentrations of TGF‐β, IL‐2, IL‐6, and IL‐23. While this approach sounds promising, the results show that only marginal improvements in the concentration of Tregs can be achieved for dynamic cytokine profiles as compared to optimal constant concentrations. Since constant concentrations are easier to implement in experiments, it is recommended for this particular system to keep the concentrations constant where IL‐6 should be kept low and high concentrations of TGF‐β, IL‐2, and IL‐23 should be used.Inspec keywords: patient treatment, molecular biophysics, proteins, cellular biophysics, diseasesOther keywords: Tregs relative, optimal input function, dynamic cytokine profiles, optimal constant concentrations, IL‐23, computational maximisation, regulatory T‐cell induction, inflammatory bowel disease, viable therapeutic option, local microenvironment, Treg differentiation, single concentrations, predicted induction, dynamic optimal experimental design, interleukin‐2, IL‐6, transforming growth factor‐β     

Influence of tool material on dynamics of drilling of GFRP composites

Drilling trials have been carried out on glass Fibre reinforced plastics (GFRP) with plain high speed steel (HSS), TiN coated HSS and tipped tungsten carbide drills. Most of the defects in drilling of composites are due to thrust force experienced by the workpiece. The parametric influence on cutting force was experimentally evaluated. The experimental results show that the defects toleranced drilling can be attained by proper selection of cutting parameters and tool material. This is substantiated by monitoring flank wear, hole shrinkage and acoustic emission during drilling.     

Development of a void ratio-moisture ratio-net stress framework for the prediction of the volumetric behavior of unsaturated granular materials

Despite extensive research on the behavior of unsaturated fine-grained materials, there is still a lack of understanding of the volumetric behavior of unsaturated granular materials. In this research, a model has been developed to predict the fundamental volumetric behavior of unsaturated granular materials through loading and wetting state paths. In this regard, a loading-wetting surface was developed in a space of void ratio-moisture ratio-net stress. A distinctive feature of the proposed model is the relative simplicity in obtaining the model parameters using conventional geotechnical testing equipment. Two types of recycled granular materials, commonly applied in unbound pavements were used, namely, recycled crushed brick (CB) and excavation waste rock (WR). The uniqueness of the developed surface was evaluated by employing a number of loading and wetting state paths. The results indicate that the developed surface is unique in its loading state paths; however, it only shows uniqueness in its wetting state paths for stress levels greater than 2000 kPa. The proposed model seeks to introduce the application of the unsaturated soil mechanics theory, for predicting the behavior of granular materials in the field, by providing a practical and cost-effective methodology.