On the Easy Use of Scientific Computing Services for Large Scale Linear Algebra and Parallel Decision Making with the P-Grade Portal

Scientific research is becoming increasingly dependent on the large-scale analysis of data using distributed computing infrastructures (Grid, cloud, GPU, etc.). Scientific computing (Petitet et al. 1999) aims at constructing mathematical models and numerical solution techniques for solving problems arising in science and engineering. In this paper, we describe the services of an integrated portal based on the P-Grade (Parallel Grid Run-time and Application Development Environment) portal (http://www.p-grade.hu) that enables the solution of large-scale linear systems of equations using direct solvers, makes easier the use of parallel block iterative algorithm and provides an interface for parallel decision making algorithms. The ultimate goal is to develop a single sign on integrated multi-service environment providing an easy access to different kind of mathematical calculations and algorithms to be performed on hybrid distributed computing infrastructures combining the benefits of large clusters, Grid or cloud, when needed.     

The long and winding road to inhaled TB therapy: not only the bug’s fault

Not all of the issues impacting the success of tuberculosis (TB) treatment arise from pathogen-related disease characteristics. Nowadays, there is an increasing awareness that antibiotic treatment is not the only answer to the TB problem, promoting the search for alternative administration strategies and host-directed therapies. Among all the administration routes, being the lungs the main TB focus, inhalation is conceptually a logical solution to enhance treatment effectiveness and compliance. Nevertheless, research efforts and funding are almost entirely conveyed to conventional approaches. This review will critically evaluate the reasons constraining research in this field, providing some future perspectives. The most recent advances in inhalation approaches for TB will be discussed, either at the preclinical or clinical phase, illustrating the risk of failure and chances of success.     

The effects of asymmetrical cold rolling on kinetics,grain size and texture in IF steels

Asymmetrical rolling is a promising way to achieve high rolling reductions and potentially grain refinement. However in steels the effect of asymmetrical rolling is not thoroughly quantified. In this paper the impact of cold asymmetrical rolling obtained by changing the roll velocity ratio (from 1.1 to 1.45) on the deformation and recrystallization features has been finely investigated by Electron Back-Scattering Diffraction in a Scanning Electron Microscope. In the investigated conditions (with low thickness reduction), it is found that asymmetrical rolling induces grain refinement and more homogeneous gamma fiber texture.     

Physicochemical and pasting properties of maize flour as a function of the interactive effect of natural-fermentation and roasting

The effect of natural-fermentation and roasting on maize physicochemical and functional properties were evaluated. Natural fermented maize seeds were soaked for variable times (0, 24 and 48 h) and directly decorticated or roasted before milling into flour. Generally during the 24 to 48 h natural fermentation, total sugars (80.3–92.0 g/100 g) and proteins contents (4.0–7.6 g/100 g) decreased while they significantly increased with soaking. Soluble sugars content of the unroasted maize significantly decreased with fermentation while that of roasted maize significantly increased. Reverse observations were made on soluble proteins. The antinutrients (phytates and total polyphenols) contents of the grains as well as the functional properties of their flours were observed to have been significantly changed following fermentation and roasting. In particular the least gelation concentration (6 to 18 g/100 mL), an important reverse index of gelating power significantly increased with fermentation and roasting. As consequence the viscosity of the fermented maize flours were systematically significantly lower than that of the unfermented flour. Generally while the effects of duration of fermentation and roasting on the viscosity were not consistent, the 48 h natural fermented and roasted flour was observed to particularly produce flours of much lower viscosity. This highlighted the positive effect of combining fermentation and roasting to improve the quality of weaning flour made from maize.     

Generation of Functional Immortalized Human Corneal Stromal Stem Cells

In addition to their therapeutic potential in regenerative medicine, human corneal stromal stem cells (CSSCs) could serve as a powerful tool for drug discovery and development. Variations from different donors, their isolation method, and their limited life span in culture hinder the utility of primary human CSSCs. To address these limitations, this study aims to establish and characterize immortalized CSSC lines (imCSSC) generated from primary human CSSCs. Primary CSSCs (pCSSC), isolated from human adult corneoscleral tissue, were transduced with ectopic expression of hTERT, c-MYC, or the large T antigen of the Simian virus 40 (SV40T) to generate imCSSC. Cellular morphology, proliferation capacity, and expression of CSSCs specific surface markers were investigated in all cell lines, including TNFAIP6 gene expression levels in vitro, a known biomarker of in vivo anti-inflammatory efficacy. SV40T-overexpressing imCSSC successfully extended the lifespan of pCSSC while retaining a similar morphology, proliferative capacity, multilineage differentiation potential, and anti-inflammatory properties. The current study serves as a proof-of-concept that immortalization of CSSCs could enable a large-scale source of CSSC for use in regenerative medicine.     

In search of the lost polychromy of English medieval alabaster panels in the Southwest of France

Polychrome alabaster carvings, representing religious scenes, constitute England's major contribution to European mediaeval sculpture. During the period between 1350 and 1550, large number of alabaster carvings were produced in the Midlands. Despite their massive destruction during the English Reformation (ca.1534), more than 2500 of them still survive, either legally exported or sold clandestinely to the Continent. With more than 100 panels still existing, the Bordeaux region holds one of the largest concentrations of these reliefs. Most of them have unfortunately lost their medieval polychromy, but 20 can still provide valuable information. They are currently studied in our multidisciplinary research program “ALBATRES” (Polychromie, pigments, perception: les albâtres anglais de la fin du Moyen Âge conservés sur le territoire aquitain. Labex LaScArBx project [2018-2020]). Focused on the panels' polychromy, the project links art history, archaeometry, optical and 3D engineering, and experimental archeology. The first aim is to obtain complete information on the materials and techniques used by medieval painters. The second consists in studying the functions of polychromy and its perception, by determining and interpreting the selection criteria and aesthetic uses of colors and gilding. The polychrome remains of the Aquitaine corpus are studied by means of visual examination, macrophotographic documentation, and noninvasive portable spectroscopic analyses (reflectance spectroscopy by fiber optics in visible and infrared ranges, fluorimetry, etc.). They reveal, among others, the presence of cinnabar, red lead, red ochre, copper green pigments, yellow ochre, gold, lead white, and others. The results allow the production of model samples to help understand the medieval color organization before proposing the coloring of a real copy of one of the studied panels (Virgin's Assumption, Musée d'Aquitaine, Bordeaux). The shape and the appearance of the color rendering could be improved thanks to a special device built at the IOGS to develop a shader that approximates as closely as possible the appearance of the panels. Finally, all information will be integrated on 3D model panels for better appreciation of the carvings and the artistic taste of medieval spectators.     

Fine (PM2.5) and coarse (PM2.5-10) particulate matter on a heavily trafficked London highway: sources and processes

A large dataset for PM2.5 and PMcoarse (PM2.5-10) concentrations monitored near a busy London highway (Marylebone Road) has been analyzed to define the factors that lead to high concentrations. The following have been highlighted as major influencing parameters: wind speed, prevailing wind direction (because of its role on the microscale dispersion within the street), the daily cycle of the atmospheric boundary layer (stable during the night/ convective and mixed during the day), and traffic density. The mainly diesel heavy-duty vehicles are the main source of fine particulate matter at Marylebone Road. In particular, lorries (trucks) dominate PM10 exhaust emissions which are mainly in the fine (<2.5 microm) size range. A strong correlation with PMcoarse suggests that the heavy-duty traffic is largely responsible for this component also. Substantial local increments in PM2.5 and PMcoarse due to traffic have been estimated and a large part of the increment in PMcoarse concentrations is inferred to arise from resuspended road dust emissions since the contribution of abrasion processes estimated from emission factors is modest. Despite the strong influence of traffic on PM concentrations measured at Marylebone Road the analysis of factors leading to the highest 5% of hourly concentrations of PM10 at Marylebone Road reveals that almost half of these events were due to building works. The other events occurred when all or most of the key factors occurred simultaneously (heavy traffic, poor dispersion, etc.). Some episodes of high PM2.5 concentrations were associated with long-range transport in which the regional PM2.5 constituted most of the local concentrations.     

Cementite dissolution at 860 °C in an Fe-Cr-C steel

In this work, cementite dissolution at 860 °C in SAE 52100 Fe-Cr-C steel is experimentally investigated using optical microscopy and dilatometry, and numerically simulated based on a model proposed to solve a vector-valued Stefan problem with a finite size of austenite cell. It is found that cementite particles are dissolved very rapidly in the initial stage and then the dissolution gradually slows as a result of the change of the concentration slope at the interface of both carbon and chromium. At the end of the dissolution process, carbon is homogeneously distributed over the austenite grain, while the chromium distribution is inhomogeneous. Nevertheless, it is also found from image analysis that during the later stage of the dissolution, the size and particle density do not decrease simultaneously, which is not taken into account by the numerical model. When applied to a thermal treatment for bainitic transformation at 230 °C, cementite dissolution at 860 °C is found to increase the incubation time and to decrease the transformation rate.     

DNA adduct formation among workers in a Thai industrial estate and nearby residents

The genotoxic effects of air pollutant exposures have been studied in people living and working in Map Ta Phut, Rayong province, Thailand, a site where is located the Map Ta Phut Industrial Estate (MIE) one of the largest steel, refinery and petrochemical complex in the South-Eastern Asia. This was done by the conduction of a transversal study aimed to compare the prevalence of bulky DNA adducts in groups of subjects experiencing various degree of air pollution. DNA adduct analysis was performed in the leukocytes of 201 volunteers by the (32)P-postlabelling assay: 79 were workers in the MIE complex, including 24 refinery workers, 40 steel workers and 15 tinplate workers, 72 were people residing downwind in the MIE area and 50 were residents in a control district of the same Rayong province but without industrial exposures. The groups of workers were analyzed separately to evaluate if DNA adduct formation differs by the type of industry. The levels of bulky DNA adducts were 1.17+/-0.17 (SE) adducts/10(8) nucleotides in refinery workers, 1.19+/-0.19 (SE) in steel workers, 0.87+/-0.17 (SE) in tinplate workers, 0.85+/-0.07 (SE) in MIE residents and 0.53+/-0.05 (SE) in district controls. No effects of smoking habits on DNA adducts was found. The multivariate regression analysis shows that the levels of DNA adducts were significantly increased among the individuals living near the MIE industrial complex in respect to those resident in a control district (p<0.05). In the groups of occupationally exposed workers, the highest levels of DNA adducts were found among the workers experiencing an occupational exposure to polycyclic aromatic hydrocarbons, e.g. the steel factory and refinery workers. When we have evaluated if the levels of DNA adducts of the PAH exposed workers were different from those of the MIE residents, a statistical significantly difference was found (p<0.05). Our present study indicates that people living near point sources of industrial air pollution can experiment an excess of DNA adduct formation. The emissions from the MIE complex are the main source of air pollution in this area and can be the cause of such increment in the levels of DNA damage.