Structure and digestibility of tissues in normal and brown midrib pearl millet (Pennisetum glaucum)

The tissues in leaf blades, midribs, sheaths and stems of normal (N), 5848, and two brown midrib (bmr) mutants, 5753 and 5778, of pearl millet (Pennisetum glaucum (L) R Br) were examined for structural characteristics related to digestibility. The anatomies of the various plant parts were not substantially different between N and bmr plants. The more rigid, lignified tissues such as vascular bundles in all plant parts and the rind of stems were not digested after incubation for 7 days in N or bmr plants, indicating that modifications in these tissues were not sufficient to affect biodegradation. Modifications in the digestible tissues resulted in faster and more extensive degradation in bmr plants, and these changes appear to be the most significant in relation to biodegradation. The parenchyma of midveins and stems, which occupies c 70 and 60% of the cross-sectional area of these respective parts, were the sites where modification in phenolics resulted in the greatest improvement in digestibility.     

Biodegradation of plant cell walls,wall carbohydrates,and wall aromatics in wheat grown in ambient or enriched CO2 concentrations

Mature internodes from wheat (Triticum aestivum L) grown in control (ambient at c 370 μnol mol^?1) or enriched (to 550 μmol mol^?1) concentrations of atmospheric CO₂ in the free-air CO₂ enrichment (FACE) system were analyzed for potential changes in biodegradation of constituents due to predicted increases in atmospheric levels of CO₂. The first internodes below the grain were incubated with the lignocellulose-degrading white rot fungus, Phanerochaete chrysosporium K-3, or incubated without microorganisms. Plant samples were then analyzed for dry weight loss, disposition of specific cell types to biodegradation using electron microscopy, carbohydrates and lignin using solid state NMR spectroscopy, and ester-and ether-linked aromatics using gas chromatography. Phanerochaete chrysosporium extensively degraded stems cells (c 75%) and both carbohydrate and aromatic portions of the wheat stems; proportionately more carbohydrates were removed by the fungus from the stems. Enriched CO₂ did not affect the chemical composition of wheat stems or the biodegradation by P chrysosporium of plant cell walls or wall components for the most part. Data from various methods all indicated that enriched CO₂ did not substantially alter the biodegradation of wheat cell wall internodes or wall components. Evidence was not found for an influence on C cycling due to CO₂ concentrations in this study.     

Phenolic constituents of cell wall types of normal and brown midrib mutants of pearl millet (Pennisetum glaucum (L) R Br) in relation to wall biodegradability

The cell walls of parenchyma, rind and vascular bundle fractions of pearl millet (Pennisetum glaucum (L) R Br) were isolated from two brown midrib mutants (bmr) 5753 and 5778 and from their normal (N) near-isogenic line. The cell wall content of parenchyma was lower than that of vascular bundle which, in turn, was lower than that of rind. The amounts of ferulic and p-coumaric acids released by NaOH treatment of the cell walls were in the ranges 3-7 mg g^?1 and 2-26 mg g^?1, respectively. Parenchyma cell walls of the N line had the highest content of p-coumaric acid (26 mg g^?1). This content of p-coumaric acid in the N line contrasts with that of bmr 5753 parenchyma (2 mg acid g^?1 walls) and bmr 5778 (7 mg acid g^?1 walls). The concentration of p-coumaric acid was highest in parenchyma cell walls that had been found to be the least digested. Parenchyma, rind and vascular bundle cells walls of the N line had much higher ratios of p-coumaric acid to ferulic acid than the mutants; rind and vascular bundle walls were less digestible than parenchyma. Small amounts of truxillic acid dimers were released by NaOH from the parenchyma walls of bmr 5778. Treatment of parenchyma, rind and vascular bundle cells walls with purified ‘driselase’ (containing xylanases and cellulases) released p-coumaroyl and feruloyl trisaccharides. Between 25 and 53% of the ferulic acid that was released by the NaOH treatment could be accounted for as feruloyl trisaccharide, but only 1-19% of the p-coumaric acid was accounted for as p-coumaroyl trisaccharide.     

Chemical and Structural Analysis of Fibre and Core Tissues from Flax

Samples of flax ( Linum usitatissimum ) stems from the cultivars ‘Natasja’ and ‘Ariane’ were separated into fibre and core fractions and analysed by gas–liquid chromatographic methods, ¹³C CPMAS NMR spectrometry, histochemistry, electron microscopy and UV absorption microspectrophotometry to assist in determining the structure and composition of these cell walls in relation to quality and utilisation. Analyses from chromatography and NMR gave similar results for carbohydrate and phenolic constituents in various samples and in the lower, more mature regions of the stem. Amounts of uronic acids and xylose were lower while amounts of mannose, galactose and glucose were higher in fibre vs core fractions. Quantities of phenolic constituents were significantly higher in the core than the fibre, with groups representative of both guaiacyl and syringyl lignins; amounts of phenolic acids were low. NMR showed a low intensity signal for aromatics in fibre, and it is possible that such signals arise from compounds in the cuticle rather than the fibre. Microscopic studies indicated that aromatic constituents were present in core cell walls, cuticle of the epidermis, and cell corners and middle lamellae of some regions within the fibre tissues. The lignin in fibre appeared to be of the guaiacyl type and may be too low in concentration to be unambiguously detected by NMR. Aromatic compounds were not observed in the epidermis or parenchyma cell walls. Similar analyses of dew-retted (unscutched) samples indicated that core tissues were mostly unchanged from unretted samples. Retted fibre tissues still contained lignified cell corners and middle lamellae in some regions. The cuticle, which was associated with retted fibres, was not degraded by dew-retting fungi. Fungi removed interfibre materials in some places and at times degraded the secondary wall near the cell lumen of fibre cells. Results indicate that microspectrophotometry and histochemistry are useful to identify the location and type of aromatics in fibre cell walls.     

Identification of Potential Insect Growth Inhibitor against Aedes aegypti: A Bioinformatics Approach

Aedes aegypti is the main vector that transmits viral diseases such as dengue, hemorrhagic dengue, urban yellow fever, zika, and chikungunya. Worldwide, many cases of dengue have been reported in recent years, showing significant growth. The best way to manage diseases transmitted by Aedes aegypti is to control the vector with insecticides, which have already been shown to be toxic to humans; moreover, insects have developed resistance. Thus, the development of new insecticides is considered an emergency. One way to achieve this goal is to apply computational methods based on ligands and target information. In this study, sixteen compounds with acceptable insecticidal activities, with 100% larvicidal activity at low concentrations (2.0 to 0.001 mg·L⁻¹), were selected from the literature. These compounds were used to build up and validate pharmacophore models. Pharmacophore model 6 (AUC = 0.78; BEDROC = 0.6) was used to filter 4793 compounds from the subset of lead-like compounds from the ZINC database; 4142 compounds (dG < 0 kcal/mol) were then aligned to the active site of the juvenile hormone receptor Aedes aegypti (PDB: 5V13), 2240 compounds (LE < −0.40 kcal/mol) were prioritized for molecular docking from the construction of a chitin deacetylase model of Aedes aegypti by the homology modeling of the Bombyx mori species (PDB: 5ZNT), which aligned 1959 compounds (dG < 0 kcal/mol), and 20 compounds (LE < −0.4 kcal/mol) were predicted for pharmacokinetic and toxicological prediction in silico (Preadmet, SwissADMET, and eMolTox programs). Finally, the theoretical routes of compounds M01, M02, M03, M04, and M05 were proposed. Compounds M01–M05 were selected, showing significant differences in pharmacokinetic and toxicological parameters in relation to positive controls and interaction with catalytic residues among key protein sites reported in the literature. For this reason, the molecules investigated here are dual inhibitors of the enzymes chitin synthase and juvenile hormonal protein from insects and humans, characterizing them as potential insecticides against the Aedes aegypti mosquito.     

Phenolic acids released from bermudagrass (Cynodon dactylon) by sequential sodium hydroxide treatment in relation to biodegradation of cell types

Sections of solvent-extracted bermudagrass (Cynodon dactylon L Pers) leaf blades were treated sequentially with increasing concentrations of sodium hydroxide. The amounts of saponifiable phenolic acid monomers and cyclobutane dimers released and the digestibility of the treated blades (ie % dry weight loss) were determined. Leaf sections were examined by scanning electron microscopy for biodegradation of cell types and histochemically (light microscopy) for lignin after treatment with sodium hydroxide. Treatment with 0.1 m sodium hydroxide for 1 h resulted in only minor changes from untreated sections. However, this treatment for 24 h released 86% of the ferulic acid, 65% of the dimers, and c 50% of the p-coumaric acid. Digestibility was increased from 6.5% in the untreated control to 56.6%. Substantial loss of the slowly biodegradable tissues (ie epidermis and parenchyma bundle sheath) and partial biodegradation and disruption of the refractory tissues (ie sclerenchyma, xylem and mestome sheath) occurred; histochemical reactions for lignin were less intense after NaOH treatment. Treatment with 1 m sodium hydroxide for 24 h released 50% of the p-coumaric acid and the remainder of the alkali-extractable ferulic acid and dimers, increased digestibility to 72%, and increased biodegradation of mesophyll and phloem. Mestome sheath cell walls only gave a histochemical reaction for phenolics and the reaction was weak after 1 m NaOH treatment. Alkali treatment increased the biodegradation of all cell types, with lignified tissues reduced to single-cell fibres after 1 and 2 m treatments.     

In situ experimental assessment of lake whitefish development following a freshwater oil spill

Wabamun Lake (Alberta, Canada) has been subject to ongoing contamination with polycyclic aromatic hydrocarbons (PAHs) from multiple sources for decades and in August 2005 was exposed to ca. 149 500 L of bunker C oil following a train derailment. We compared the pattern, frequency, and severity of deformity in larvae of lake whitefish (Coregonus clupeaformis) incubated in situ in areas of Wabamun Lake exposed only to "background" PAH contamination and in areas additionally exposed to PAHs from the oil. All sites in the lake (including reference areas) showed incidences of deformity higher than are typically observed in laboratory studies. A small number of oil-exposed sites showed higher incidences of some teratogenic deformities and a tendency to exhibit deformities of higher severity than sites not exposed to oil. The frequency of moderate to severe deformities in 8 of 16 classes was correlated with PAH exposure. Nonmetric multivariate ordination of deformity data revealed a general pattern of increasing incidence and severity of several skeletal (lordosis, scoliosis) and craniofacial (ocular, jaw) deformities at sites with relatively high exposure to oil-derived PAHs. A simultaneous consideration of incidence, severity, and pattern of deformity enabled us to detect a consistent (overall approximately 5% above background) response to the oil despite high variability and high background deformity rates in this historically contaminated environment.     

Recoverability of Listeria monocytogenes after coculture with Tetrahymena pyriformis

Bactivory by protozoa is a major factor that limits the number of bacteria in nature and may control the presence of Listeria monocytogenes. The effectiveness of Tetrahymena pyriformis destruction of L. monocytogenes was measured. Within 1 hr, 35–40 T. pyriformis cells ingested an average of 1,219 CFU of L. monocytogenes. Gentamicin was then added to kill un-ingested Listeria. In 24 hr, the recoverable bacteria were reduced at an exponential rate to undetectable levels (<1 per culture). A genetically diverse set of L. monocytogenes cultures all reduced Listeria recovery by the same degree. In assays without addition of gentamicin, numbers of attached L. monocytogenes cells were lessened from an average of log 6.5 CFU/2 ml culture to log 4.7 CFU/2 ml culture. T. pyriformis was capable of lowering numbers of both free-swimming and attached L. monocytogenes. This technology may have applications to control L. monocytogenes in food processing environments.     

Food versus fuel: What do prices tell us?

Sorting out the impacts of biofuels on global agricultural commodity prices is impossible without turning to data and distinguishing between the short-run versus the long-run impacts. Using time-series prices on fuels and agricultural commodities, the aim is to investigate the long-run cointegration of these prices simultaneously with their multivariate short-run interactions. Results indicate no direct long-run price relations between fuel and agricultural commodity prices, and limited if any direct short-run relationships. In terms of short-run price movements, sugar prices are influencing all the other agricultural commodity prices except rice. With sugar the number one world input for ethanol, results indicate increased ethanol production is potentially influencing short-run agricultural commodity prices. Overall, results support the effect of agricultural commodity prices as market signals which restore commodity markets to their equilibria after a demand or supply event (shock).     

Reducing Staphylococcus aureus biofilm formation on stainless steel 316L using functionalized self-assembled monolayers

Stainless steel 316L (SS316L) is a common material used in orthopedic implants. Bacterial colonization of the surface and subsequent biofilm development can lead to refractory infection of the implant. Since the greatest risk of infection occurs perioperatively, strategies that reduce bacterial adhesion during this time are important. As a strategy to limit bacterial adhesion and biofilm formation on SS316L, self-assembled monolayers (SAMs) were used to modify the SS316L surface. SAMs with long alkyl chains terminated with hydrophobic (? CH₃) or hydrophilic (oligoethylene glycol) tail groups were used to form coatings and in an orthogonal approach, SAMs were used to immobilize gentamicin or vancomycin on SS316L for the first time to form an “active” antimicrobial coating to inhibit early biofilm development. Modified SS316L surfaces were characterized using surface infrared spectroscopy, contact angles, MALDI-TOF mass spectrometry and atomic force microscopy. The ability of SAM-modified SS316L to retard biofilm development by Staphylococcus aureus was functionally tested using confocal scanning laser microscopy with COMSTAT image analysis, scanning electron microscopy and colony forming unit analysis. Neither hydrophobic nor hydrophilic SAMs reduced biofilm development. However, gentamicin-linked and vancomycin-linked SAMs significantly reduced S. aureus biofilm formation for up to 24 and 48 h, respectively.