Incorporation and distribution of saturated and unsaturated fatty acids into nuclear lipids of hepatic cells

Liver nuclear incorporation of stearic (18∶0), linoleic (18∶2n−6), and arachidonic (20∶4n−6) acids was studied by incubation in vitro of the [1-¹⁴C] fatty acids with nuclei, with or without the cytosol fraction at different times. The [1-¹⁴C] fatty acids were incorporated into the nuclei as free fatty acids in the following order: 18∶0>20∶4n−6≫18∶2n−6, and esterified into nuclear lipids by an acyl-CoA pathway. All [1-¹⁴C] fatty acids were esterified mainly to phospholipids and triacylglycerols and in a minor proportion to diacylglycerols. Only [1-¹⁴C] 18∶2n−6-CoA was incorporated into cholesterol esters. The incorporation was not modified by cytosol addition. The incorporation of 20∶4n−6 into nuclear phosphatidylcholine (PC) pools was also studied by incubation of liver nuclei in vitro with [1-¹⁴C]20∶4n−6-CoA, and nuclear labeled PC molecular species were determined. From the 15 PC nuclear molecular species determined, five were labeled with [1-¹⁴C]20∶4n−6-CoA: 18∶0–20∶4, 16∶0–20∶4, 18∶1–20∶4, 18∶2–20∶4, and 20∶4–20∶4. The highest specific radioactivity was found in 20∶4–20∶4 PC, which is a minor species. In conclusion, liver cell nuclei possess the necessary enzymes to incorporate exogenous saturated and unsaturated fatty acids into lipids by an acyl-CoA pathway, showing specificity for each fatty acid. Liver cell nuclei also utilize exogenous 20∶4n−6-CoA to synthesize the major molecular species of PC with 20∶4n−6 at the sn-2 position. However, the most actively synthesized is 20∶4–20∶4 PC, which is a quantitatively minor component. The labeling pattern of 20∶4–20∶4 PC would indicate that this molecular species is synthesized mainly by the de novo pathway.     

A knowledge-based analysis of global function computation

Consider a distributed system N in which each agent has an input value and each communication link has a weight. Given a global function, that is, a function f whose value depends on the whole network, the goal is for every agent to eventually compute the value f (N). We call this problem global function computation. Various solutions for instances of this problem, such as Boolean function computation, leader election, (minimum) spanning tree construction, and network determination, have been proposed, each under particular assumptions about what processors know about the system and how this knowledge can be acquired. We give a necessary and sufficient condition for the problem to be solvable that generalizes a number of well-known results (Attyia et al. in J ACM 35(4):845–875, 1988; Yamashita and Kameda in IEEE Trans Parallel Distrib Syst 7(1):69–89, 1996; Yamashita and Kameda in IEEE Trans Parallel Distrib Syst 10(9):878–887, 1999). We then provide a knowledge-based (kb) program (like those of Fagin et al. (Reasoning about knowledge, MIT Press, Cambridge, 1995, Distrib Comput 10(4):199–225, 1997)) that solves global function computation whenever possible. Finally, we improve the message overhead inherent in our initial kb program by giving a counterfactual belief-based program (Halpern and Moses in Distrib Comput 17(2):91–106, 2004) that also solves the global function computation whenever possible, but where agents send messages only when they believe it is necessary to do so. The latter program is shown to be implemented by a number of well-known algorithms for solving leader election.     

VPI-FP: an integrative information system for factory planning

Nowadays, one of the main challenges in factory planning is the consistent and coherent information modelling along planning processes. Despite the current efforts in the fields of virtual production as well as digital and virtual factory, planning and simulation applications mostly support only the analysis and the optimisation of single planning aspects. However, to match nowadays challenges, planners require solutions that provide an integrated view to evaluate planning scenarios in advance and to achieve increasing production quality and efficiency. The concept of virtual production intelligence (VPI) provides a basic concept for such an integrative information system that enables planners to integrate, to aggregate and to analyse data gathered during one planning project as well as to compare different projects. In this study, we present such an information system for factory planning using the concept of the VPI. The focus lies in particular on the information modelling as well as the information integration and evaluation. Therefore, the study presents theoretical basics and implementations of the VPI platform within a precise application scenario in factory planning. This is to process and provide a consolidated information base along the whole planning process to support factory planning projects.     

A sorption rate hypothesis for the increase in H2 permeability of palladium-silver (Pd-Ag) membranes caused by air oxidation

Hydrogen permeation measurements were performed at 300 °C for 25-μm cold-rolled Pd-Ag 25 wt% membranes before and after air oxidation at the same temperature as permeation. The air oxidation resulted in enhanced H₂ permeation through the membrane, as well as a roughening of the surface with the formation of surface grains and defects. The protruding grains can be leveled off by exposure to H₂ but the surface defects cannot. These microstructure changes are only on the membrane surfaces and do not create transmembrane defects that would allow permeation for gas species other than H₂. The H₂ permeability of the oxidized membrane increased by 25-90% compared to that of the as-received film at the same permeation condition, and the membranes retained perfect H₂ selectivity over N₂. The percent improvement of H₂ permeability decreases with increasing H₂ feed pressure. A new sorption kinetics hypothesis is proposed to elucidate the increase in H₂ permeability of Pd-Ag membranes caused by oxidation. H₂ solubility and sorption rate results were presented to test the new hypothesis. It is found that air oxidation does not change the H₂ solubility in Pd-Ag membranes, but enhances the H₂ sorption kinetics significantly. The extent of kinetics enhancement also decreases with increasing H₂ pressures. The much faster sorption equilibrium implies higher effective H₂ diffusivity at the Pd-Ag membrane surface for the oxidized sample and a higher transfer rate of atomic hydrogen from surface/sub-surface to the membrane bulk that contributes to the increase of H₂ permeability observed in experiments.     

Hsp100 Molecular Chaperone ClpB and Its Role in Virulence of Bacterial Pathogens

This review focuses on the molecular chaperone ClpB that belongs to the Hsp100/Clp subfamily of the AAA+ ATPases and its biological function in selected bacterial pathogens, causing a variety of human infectious diseases, including zoonoses. It has been established that ClpB disaggregates and reactivates aggregated cellular proteins. It has been postulated that ClpB’s protein disaggregation activity supports the survival of pathogenic bacteria under host-induced stresses (e.g., high temperature and oxidative stress), which allows them to rapidly adapt to the human host and establish infection. Interestingly, ClpB may also perform other functions in pathogenic bacteria, which are required for their virulence. Since ClpB is not found in human cells, this chaperone emerges as an attractive target for novel antimicrobial therapies in combating bacterial infections.     

On parallel push–relabel based algorithms for bipartite maximum matching

We study multithreaded push–relabel based algorithms for computing maximum cardinality matching in bipartite graphs. Matching is a fundamental combinatorial problem with applications in a wide variety of problems in science and engineering. We are motivated by its use in the context of sparse linear solvers for computing the maximum transversal of a matrix. Other applications can be found in many fields such as bioinformatics (Azad et al., 2010) [4], scheduling (Timmer and Jess, 1995) [27], and chemical structure analysis (John, 1995) [14]. We implement and test our algorithms on several multi-socket multicore systems and compare their performance to state-of-the-art augmenting path-based serial and parallel algorithms using a test set comprised of a wide range of real-world instances.     

Prodynorphin and Proenkephalin in Cerebrospinal Fluid of Sporadic Creutzfeldt–Jakob Disease

Proenkephalin (PENK) and prodynorphin (PDYN) are endogenous opioid peptides mainly produced in the striatum and, to a lesser extent, in the cerebral cortex. Dysregulated metabolism and altered cerebrospinal fluid (CSF) levels of PENK and PDYN have been described in several neurodegenerative diseases. However, no study to date investigated these peptides in the CSF of sporadic Creutzfeldt–Jakob disease (sCJD). Using liquid chromatography-multiple reaction monitoring mass spectrometry, we evaluated the CSF PDYN- and PENK-derived peptide levels in 25 controls and 63 patients with sCJD belonging to the most prevalent molecular subtypes (MM(V)1, VV2 and MV2K). One of the PENK-derived peptides was significantly decreased in each sCJD subtype compared to the controls without a difference among subtypes. Conversely, PDYN-derived peptides were selectively decreased in the CSF of sCJD MV2K, a subtype with a more widespread overall pathology compared to the sCJD MM(V)1 and the VV2 subtypes, which we confirmed by semiquantitative analysis of cortical and striatal neuronal loss and astrocytosis. In sCJD CSF PENK and PDYN were associated with CSF biomarkers of neurodegeneration but not with clinical variables and showed a poor diagnostic performance. CSF PDYN and PENK-derived peptides had no significant diagnostic and prognostic values in sCJD; however, the distinct marker levels between molecular subtypes might help to better understand the basis of phenotypic heterogeneity determined by divergent neuronal targeting.     

Closed-Form Thermoelastic Moduli of a Periodic Three-Phase Fiber-Reinforced Composite

ABSTRACT

In previous works, using the asymptotic homogenization method (AHM), analytical formulae have been obtained for all global elastic constants of a binary fiber composite with perfect interfaces. In many cases of interest the perfect interphase is not an adequate model and it is necessary to include in the analytical models one or more interphases separating the reinforcement inclusion phase from the host matrix phase. In this article, an extension of AHM to thermoelastic heterogeneous problems is given. A simple closed form of effective properties for a three-phase unidirectional transversely isotropic composite is presented. By using homogenization schemes for periodic media, the local problems are solved and effective thermoelastic properties moduli are determined. The method is based on the assumption that the scale ratio between the periodic cell and the whole composite tends to zero. New universal relations for the three-phase thermoelastic composite are found from the AHM. In order to analyze the interphase effect, the effective thermoelastic moduli are compared with some theoretical approaches and experimental results reported in the literature.