Structural,optical, and electrical properties of NixZn1−xFe2O4 thin film prepared by spray pyrolysis route

Journal of Materials Science: Materials in Electronics - Nanocrystalline spinel NixZn1?xFe2O4 (x?=?0.0, 0.3, 0.5, 0.7) thin films have been deposited on glass substrate at...     

Investigation of the Effects and Mechanisms of Anticancer Action of a Ru(II)-Arene Iminophosphorane Compound in Triple Negative Breast Cancer Cells

Triple negative breast cancer (TNBC) is one of the breast cancers with poorer prognosis and survival rates. TNBC has a disproportionally high incidence and mortality in women of African descent. We report on the evaluation of Ru-IM ( 1 ), a water-soluble organometallic ruthenium compound, in TNBC cell lines derived from patients of European (MDA-MB-231) and African (HCC-1806) ancestry (including IC₅₀ values, cellular and organelle uptake, cell death pathways, cell cycle, effects on migration, invasion, and angiogenesis, a preliminary proteomic analysis, and an NCI 60 cell-line panel screen). 1 was previously found highly efficacious in MDA-MB-231 cells and xenografts, with little systemic toxicity and preferential accumulation in the tumor. We observe a similar profile for this compound in the two cell lines studied, which includes high cytotoxicity, apoptotic behavior and potential antimetastatic and antiangiogenic properties. Cytokine M-CSF, involved in the PI3/AKT pathway, shows protein expression inhibition with exposure to 1 . We also demonstrate a p53 independent mechanism of action.     

Determination of phenol in the Bangsai River water of Bangladesh by gas chromatography-mass spectrometry

A simple, sensitive and rapid gas chromatography-mass spectrometry (GC-MS) method is proposed for the analysis of some environmentally important highly toxic phenols in water. The concentration level of phenol was determined in water at the sampling stations of Savar, Dhaka Export Processing Zone (DEPZ) and Bank Colony of the Bangsai River, Bangladesh. Water samples were collected from different depth of the sampling stations. The phenolic compounds were extracted with dichloromethane, which was further preconcentrated by evaporation. Different concentrations of toxic phenol were obtained in the river water at the various sampling stations. The concentration of highly toxic phenol was found in the range of 0.01–0.998 μg L⁻¹. This method could permit the analysis of water for phenol as well as phenolic derivatives with detection limit as low as 100 ng L⁻¹.     

Interaction between chronic arsenic exposure via drinking water and plasma lactate dehydrogenase activity

Arsenic is a potent environmental pollutant that has caused one of the largest public health poisonings in the history of human civilization, affecting tens of millions of people worldwide especially in Bangladesh. Lactate dehydrogenase (LDH) in blood plays an important role in predicting cell or organ damage and as an important clue to the diagnosis of a variety of cancers. However, effect of chronic arsenic exposure on the LDH level in blood has not yet been documented. Since the chronic arsenic exposure is associated with organ damages and multi-site cancers, this research aimed at assaying the plasma level of LDH activity in the population who were exposed to arsenic chronically in Bangladesh. A total of 185 individuals living in arsenic-exposed areas and 121 individuals living in non-exposed area in Bangladesh were recruited as study subjects. Arsenic content in drinking water, hair and nails were estimated by Inductively Coupled Plasma Mass Spectroscopy (ICP-MS) and LDH activity was assayed by a spectrophotometer. Significant increase in LDH activity was observed with increasing concentrations of arsenic in water, hair and nails. Further, the study subjects were split into four groups based on the three ways of each exposure metrics (water, hair and nail arsenic concentrations) where the study subjects in the non-exposed area were used as a reference (lowest exposure) group. LDH activity was found to be increased in the higher exposure groups of water and hair arsenic concentrations. LDH activity was also increased at low to medium exposure groups of nail arsenic concentrations.Thus, the elevated plasma LDH activity might be helpful for the early prognosis of organ or tissue damage in the individuals who were exposed to arsenic chronically.     

Structural Consequence of Non-Synonymous Single-Nucleotide Variants in the N-Terminal Domain of LIS1

Disruptive neuronal migration during early brain development causes severe brain malformation. Characterized by mislocalization of cortical neurons, this condition is a result of the loss of function of migration regulating genes. One known neuronal migration disorder is lissencephaly (LIS), which is caused by deletions or mutations of the LIS1 (PAFAH1B1) gene that has been implicated in regulating the microtubule motor protein cytoplasmic dynein. Although this class of diseases has recently received considerable attention, the roles of non-synonymous polymorphisms (nsSNPs) in LIS1 on lissencephaly progression remain elusive. Therefore, the present study employed combined bioinformatics and molecular modeling approach to identify potential damaging nsSNPs in the LIS1 gene and provide atomic insight into their roles in LIS1 loss of function. Using this approach, we identified three high-risk nsSNPs, including rs121434486 (F31S), rs587784254 (W55R), and rs757993270 (W55L) in the LIS1 gene, which are located on the N-terminal domain of LIS1. Molecular dynamics simulation highlighted that all variants decreased helical conformation, increased the intermonomeric distance, and thus disrupted intermonomeric contacts in the LIS1 dimer. Furthermore, the presence of variants also caused a loss of positive electrostatic potential and reduced dimer binding potential. Since self-dimerization is an essential aspect of LIS1 to recruit interacting partners, thus these variants are associated with the loss of LIS1 functions. As a corollary, these findings may further provide critical insights on the roles of LIS1 variants in brain malformation.     

The Size and Power of the Bias-Corrected Bootstrap Test for Regression Models with Autocorrelated Errors

This paper is concerned with statistical inference for the coefficient of the linear regression model when the error term follows an autoregressive (AR) model. Past studies have reported severe size distortions, when the data are trending and autocorrelation of the error term is high. In this paper, we consider a test based on the bias-corrected bootstrap, where bias-corrected parameter estimators for the AR and regression coefficients are used. For bias-correction, the jackknife and bootstrap methods are employed. Monte Carlo simulations are conducted to compare size and power properties of the bias-corrected bootstrap test. It is found that the bias-corrected bootstrap test shows substantially improved size properties and exhibits excellent power for most of cases considered. It also appears that bootstrap bias-correction leads to better size and higher power values than jackknife bias-correction. These results are found to be robust to the choice of parameter estimation methods.JEL classifications: C12, C15, C63     

Computational Insights into the Deleterious Impacts of Missense Variants on N-Acetyl-d-glucosamine Kinase Structure and Function

An enzyme of the mammalian amino-sugar metabolism pathway, N-acetylglucosamine kinase (NAGK), that synthesizes N-acetylglucosamine (GlcNAc)-6-phosphate, is reported to promote dynein functions during mitosis, axonal and dendritic growth, cell migration, and selective autophagy, which all are unrelated to its enzyme activity. As non-enzymatic structural functions can be altered by genetic variation, we made an effort in this study aimed at deciphering the pathological effect of nonsynonymous single-nucleotide polymorphisms (nsSNPs) in NAGK gene. An integrated computational approach, including molecular dynamics (MD) simulation and protein–protein docking simulation, was used to identify the damaging nsSNPs and their detailed structural and functional consequences. The analysis revealed the four most damaging variants (G11R, G32R, G120E, and A156D), which are highly conserved and functional, positioned in both small (G11R and G32R) and large (G120E and A156D) domains of NAGK. G11R is located in the ATP binding region, while variants present in the large domain (G120E and A156D) were found to induce substantial alterations in the structural organizations of both domains, including the ATP and substrate binding sites. Furthermore, all variants were found to reduce binding energy between NAGK and dynein subunit DYNLRB1, as revealed by protein–protein docking and MM-GBSA binding energy calculation supporting their deleteriousness on non-canonical function. We hope these findings will direct future studies to gain more insight into the role of these variants in the loss of NAGK function and their role in neurodevelopmental disorders.     

Distribution of naturally occurring radionuclides in soils of the southern districts of Bangladesh

The activity concentrations of naturally occurring radioactive materials in soil samples of an elevated radiation background area of nine southern districts of Bangladesh were determined using gamma-ray spectrometry with an aim of evaluating the environmental radioactivity. The outdoor and indoor external effective dose rates and the radiation hazard indices from the soil activity were evaluated with an aim of minimising the harmful effects of ionising radiation to the population of the area concerned. The activity of (137)Cs was measured and observed in some of the locations.     

Performance evaluation of polymeric blend of vinyl acetate and acrylate-based copolymers in lubricating oil

Polymer modification processes like blending has attracted much attention as an easy, cost-effective and less time-consuming method for developing new polymeric materials enriched with versatile commercial application. Polymer blends are supposed to carry better thermal and mechanical properties compared to their parent polymers. In this view we have prepared a polymer blend of two copolymers– one of vinyl acetate and octyl acrylate and another of methyl methacrylate and dodecyl acrylate and characterized them by FT-IR and NMR spectroscopy. The molecular weight was determined by Gel Permeation Chromatography (GPC). We represented here a comparative study of their mechanical property as well as their performance as flow improver.