Engineering of functional supramacromolecular complexes of proteins (enzymes) using reversed micelles as matrix microreactors

The size of the inner water cavity of reversed micelles formedin a triple system ‘water-surfactant-organic solvent’can be widely varied by changing the degree of surfactant hydration.This gives grounds to use reversed micelles as matrix microreactorsfor the design of supramolecular complexes of proteins. Usingultracentrifugation analysis, it has been demonstrated thatthe oligomeric composition of various enzymes (ketoglutaratedehydrogenase, alkaline phosphatase, lactic dehydrogenase, glyceraldehyde-3-phosphatedehydrogenase) solubilized in reversed micelles of Aerosol OT[sodium bis(2-ethylehexyl)sulfosuccinate] in octane changesupon variation of the degree of hydration. An oligomeric complexforms under conditions when the radius of the micelle innercavity is big enough to incorporate this complex as a whole.At lower degrees of hydration the micelles ‘uncouple’such complexes to their components. The catalytic propertiesof various oligomeric complexes have been studied. Possibilitiesof using reversed micelles for the separation of subunits ofoligomeric enzymes under non-denaturating conditions have beendemonstrated. In particular, the isolated subunits of alkalinephosphatase, lactic dehydrogenase and glyceralde-hyde-3-phosphatedehydrogenase have been found to be active in Aerosol OT reversedmicelles. The dependences of the catalytic activity of oligomericenzymes represent saw-like curves. The maxima of the catalyticactivity observed at these curves relate to the functioningof various oligomeric forms of an enzyme. The radii of the micelleinner cavity under conditions when these maxima are observedcorrelate with the linear dimensions of the enzyme oligomericforms. Correlation of the position of a maximum with the shapeof an oligomeric complex is discussed.     

Effect of photoaligning azo dye structure on liquid crystal anchoring energy

A method of controlling anchoring energy of surface interaction of liquid crystal photoaligning substances is considered to enhance the liquid crystal display performances. An important parameter of the dye's molecular structure that determines the ratio of polar and azimuthal anchoring energy is the ability to form dimers. The values of dimerization thermodynamic potentials have been found. The probability of the formation of dye molecules dimers is evaluated. The bonds conjugation transfer via intermolecular hydrogen bond is revealed, and anisotropy of polarizability of the hydrogen bond is evaluated. The effect of dimerization on polar and azimuthal anchoring energy of liquid crystal — azo dye system — is shown.     

Reputation management algorithms for DHT-based peer-to-peer environment

This paper addresses the problem of integration of reputation management mechanisms into data look-up and routing processes to cope with some specific security problems in peer-to-peer (P2P) networks based on Distributed Hash Tables (DHT). The goal is to find a mode for “good” peers to cooperate in order to withstand malicious activity of single malevolent peers and their collusions as well.We start from consideration of individual instruments for reputation evaluation that every single peer should be provided with to autonomously define the level of its own trust towards others. We also propose a possible scenario of integration of some existing reputation management techniques and routing mechanisms in a P2P network based on the popular Kademlia algorithm. Then, we present an interaction algorithm that allows peers to obtain the global trust value for each single node through exchanging opinions in the form of local trust values independently calculated by every peer with other members of the community. Such collaboration between peers is indispensable to cope with malicious activity of inconsistent nature specific to DHT-based environment. To render the algorithm resilient to the presence of malicious participants we propose to apply solutions for Byzantine Agreement to exchange opinions among peers. We also provide mathematical evaluations concerning the complexity and computational costs of the proposed algorithm that evidence apparent improvements over the previous one.     

Communication and reputation as essentials for the positioning of an organization

Communication and reputation are essential for the positioning of an organization, which is based on communications theory, management sociology, corporate management, and public relations. Corporate culture and visual identity are also important for any organization; they not only help develop an integrated image of the organization but also contribute to developing its successful positioning strategy. We began our research with the analysis stage, in which we elicited the practices of both the internal and external communications of the organization studied. We used such methods as communication and reputation audits with a questionnaire survey, focus groups, the semantic differential method, and the projective method. The analysis stage of the research produced results that helped us adjust the positioning strategy of the organization by taking into account its individual characteristics and the features of its target publics and its target markets.     

Translating the Foundational Model of Anatomy into OWL

The Foundational Model of Anatomy (FMA) represents the result of manual and disciplined modeling of the structural organization of the human body. It is a tremendous resource in bioinformatics that facilitates sharing of information among applications that use anatomy knowledge. The FMA was developed in Protégé and the Protégé frames language is the canonical representation language for the FMA. We present a translation of the original Protégé frame representation of the FMA into OWL. Our effort is complementary to the earlier efforts to represent FMA in OWL and is focused on two main goals: (1) representing only the information that is explicitly present in the frames representation of the FMA or that can be directly inferred from the semantics of Protégé frames; (2) representing all the information that is present in the frames representation of the FMA, thus producing an OWL representation for the complete FMA. Our complete representation of the FMA in OWL consists of two components: an OWL DL component that contains the FMA constructs that are compatible with OWL DL; and an OWL Full component that imports the OWL DL component and adds the FMA constructs that OWL DL does not allow.     

The PROMPT suite: interactive tools for ontology merging and mapping

Researchers in the ontology-design field have developed the content for ontologies in many domain areas. This distributed nature of ontology development has led to a large number of ontologies covering overlapping domains. In order for these ontologies to be reused, they first need to be merged or aligned to one another. We developed a suite of tools for managing multiple ontologies. These suite provides users with a uniform framework for comparing, aligning, and merging ontologies, maintaining versions, translating between different formalisms. Two of the tools in the suite support semi-automatic ontology merging: P is an interactive ontology-merging tool that guides the user through the merging process, presenting him with suggestions for next steps and identifying inconsistencies and potential problems. A P uses a graph structure of ontologies to find correlation between concepts and to provide additional information for P .     

Isolation and Characterization of Two Novel Siphoviruses Novomoskovsk and Bolokhovo,Encoding Polysaccharide Depolymerases Active against Bacillus pumilus

This study describes two novel bacteriophages infecting members of the Bacillus pumilus group. Even though members of the group are not recognized as pathogenic, several strains belonging to the group have been reported to cause infectious diseases in plants, animals and humans. Bacillus pumilus group species are highly resistant to ultraviolet radiation and capable of forming biofilms, which complicates their eradication. Bacteriophages Novomoskovsk and Bolokhovo were isolated from soil samples. Genome sequencing and phylogenetic analysis revealed that the phages represent two new species of the genus Andromedavirus (class Caudoviricetes). The phages remained stable in a wide range of temperatures and pH values. A host range test showed that the phages specifically infect various strains of B. pumilus. The phages form clear plaques surrounded by halos. Both phages Novomoskovsk and Bolokhovo encode proteins with pectin lyase domains—Putative depolymerases. Obtained in a purified recombinant form, the proteins produced lysis zones on the lawn of a B. pumilus strain. This suggests that Novomoskovsk and Bolokhovo may be effective for the eradication of B. pumilus biofilms.     

Managerial identity work in action: performative narratives and anecdotal stories of innovation

Innovation is invariably accepted as a central component of construction sector competitiveness. Yet, there remains a paucity of empirical research, which explores the gap between the way innovation is promoted in the policy discourse and how it is interpreted in practice. We follow the “narrative turn” in organization studies to explore the ways in which senior executives in the UK construction sector ascribe themselves with informal roles while advocating the cause of innovation. Empirical data is derived from narrative interviews with 32 senior executives who self-identify as “innovation champions”. When talking about innovation, the respondents were found to oscillate between performative narratives of innovation and more personalized stories derived from their own experience. The narratives were invariably pre-rehearsed often to the point of being monotonous. In contrast, the personalized stories tended to be engaging and emotionally laden. The tendency for senior executives to oscillate between narratives and stories is seen as an important means through which they search for meaning while at the same time legitimizing their self-identities as “innovation champions”. Of particular note is the way in which senior managers self-ascribe themselves with informal roles which are notably at odds with those described in more formalized narratives.     

Catalytic Sulfation of Betulin with Sulfamic Acid: Experiment and DFT Calculation

Betulin is an important triterpenoid substance isolated from birch bark, which, together with its sulfates, exhibits important bioactive properties. We report on a newly developed method of betulin sulfation with sulfamic acid in pyridine in the presence of an Amberlyst^®15 solid acid catalyst. It has been shown that this catalyst remains stable when being repeatedly (up to four cycles) used and ensures obtaining of sulfated betulin with a sulfur content of ~10%. The introduction of the sulfate group into the betulin molecule has been proven by Fourier-transform infrared, ultraviolet-visible, and nuclear magnetic resonance spectroscopy. The Fourier-transform infrared (FTIR) spectra contain absorption bands at 1249 and 835–841 cm⁻¹; in the UV spectra, the peak intensity decreases; and, in the nuclear magnetic resonance (NMR) spectra, of betulin disulfate, carbons С3 and С28 are completely shifted to the weak-field region (to 88.21 and 67.32 ppm, respectively) with respect to betulin. Using the potentiometric titration method, the product of acidity constants K₁ and K₂ of a solution of the betulin disulfate H⁺ form has been found to be 3.86 × 10^–6 ± 0.004. It has been demonstrated by the thermal analysis that betulin and the betulin disulfate sodium salt are stable at temperatures of up to 240 and 220 °C, respectively. The density functional theory method has been used to obtain data on the most stable conformations, molecular electrostatic potential, frontier molecular orbitals, and mulliken atomic charges of betulin and betulin disulfate and to calculate the spectral characteristics of initial and sulfated betulin, which agree well with the experimental data.