Native Liquid Chromatography and Mass Spectrometry to Structurally and Functionally Characterize Endo-Xylanase Proteoforms

Xylanases are of great value in various industries, including paper, food, and biorefinery. Due to their biotechnological production, these enzymes can contain a variety of post-translational modifications, which may have a profound effect on protein function. Understanding the structure–function relationship can guide the development of products with optimal performance. We have developed a workflow for the structural and functional characterization of an endo-1,4-β-xylanase (ENDO-I) produced by Aspergillus niger with and without applying thermal stress. This workflow relies on orthogonal native separation techniques to resolve proteoforms. Mass spectrometry and activity assays of separated proteoforms permitted the establishment of structure–function relationships. The separation conditions were focus on balancing efficient separation and protein functionality. We employed size exclusion chromatography (SEC) to separate ENDO-I from other co-expressed proteins. Charge variants were investigated with ion exchange chromatography (IEX) and revealed the presence of low abundant glycated variants in the temperature-stressed material. To obtain better insights into the effect on glycation on function, we enriched for these species using boronate affinity chromatography (BAC). The activity measurements showed lower activity of glycated species compared to the non-modified enzyme. Altogether, this workflow allowed in-depth structural and functional characterization of ENDO-I proteoforms.     

Surgical anatomy of the infratemporal fossa: the styloid diaphragm revisited

INTRODUCTION: The infratemporal fossa (ITF) gives passage to most major cerebral vessels and cranial nerves. Dissection of the ITF is essential in many of the lateral cranial base approaches and in exposure of the high cervical internal carotid artery (ICA). We reviewed the surgical anatomy of this region. METHODS: Direct foraminal measurements were made in seven dry skulls (14 sides), and the relationship of these foramina to each other and various landmarks were determined. Ten ITF dissections were performed using a preauricular subtemporal-infratemporal approach. Preliminary dissections of the extracranial great vessels and structures larger than 1 cm were performed using standard macroscopic surgical techniques. Dissection of all structures less than 1 cm was conducted using microsurgical techniques and instruments, including the operating microscope. The anatomic relationships of the muscles, nerves, arteries, and veins were carefully recorded, with special emphasis regarding the relationship of these structures to the styloid diaphragm. The dissection was purely extradural. RESULTS: The styloid diaphragm was identified in all specimens. It divides the ITF into the prestyloid region and the retrostyloid region. The prestyloid region contains the parotid gland and associated structures, including the facial nerve and external carotid artery. The retrostyloid region contains major vascular structures (ICA, internal jugular vein) and the initial exocranial portion of the lower Cranial Nerves IX through XII. Landmarks were identified for the different cranial nerves. The bifurcation of the main trunk of the facial nerve was an average of 21 mm medial to the cartilaginous pointer and an average of 31 mm medial to the tragus of the ear. The glossopharyngeal nerve was found posterior and lateral to stylopharyngeus muscle in nine cases and medial in only one. The vagus nerve was consistently found in the angle formed posteriorly by the ICA and the internal jugular vein. The spinal accessory nerve crossed anterior to the internal jugular vein in five cases and posterior in another five cases. It could be located as it entered the medial surface of the sternocleidomastoid muscle 28 mm (mean) below the mastoid tip. The hypoglossal nerve was most consistently identified as it crossed under the sternocleidomastoid branch of the occipital artery 25 mm posterior to the angle of the mandible and 52 mm anterior and inferior to the mastoid tip. CONCLUSION: The styloid diaphragm divides the ITF into prestyloid and retrostyloid regions and covers the high cervical ICA. Using landmarks for the exocranial portion of the lower cranial nerves is useful it identifying them and avoiding injury during approaches to the high cervical ICA, the upper cervical spine, and the ITF.     

Reactivity of Aluminum Spinels in the Ethanol Steam Reforming Reaction

Aluminum spinels, MAl₂O₄ with M²⁺ = Cu, Zn or Ni, were prepared by citrate method and its reactivity in the ethanol steam reforming reaction was studied at 500 °C. They were characterized by TG, BET surface area, XRD, FTIR and TPR techniques. The catalytic behavior depended strongly on the nature of divalent metal which determines the physico-chemical properties of samples. In all cases, very active catalysts with a complete ethanol conversion were reached. Hydrogen yield follows the order of ZnAl > NiAl > CuAl.     

Selective oxidation of propane on MgO/γ‐Al2O3‐supported molybdenum catalyst: influence of promoters

The influence of promoters, potassium and samarium, on molybdenum supported over MgO–γ‐Al₂O₃ catalyst has been investigated in the oxidative dehydrogenation of propane. The acidities of catalysts were determined by temperature‐programmed desorption of NH₃ and by decomposition of 2‐propanol. The K‐promoted catalyst showed the lower acidity followed by the Sm, whereas the unpromoted sample showed the highest acidity. The higher the acid character of the catalyst, the lower the selectivity to propene. Redox properties determined from EPR spectra change with the addition of the promoter. A parallelism between Mo⁶⁺ reducibility and catalytic activity was found. This revised version was published online in July 2006 with corrections to the Cover Date.     

Co catalysts modified by rare earths (La,Ce or Pr) for hydrogen production from ethanol

Co/MgAl₂O₄ catalysts modified with La, Pr or Ce were prepared, characterized by different techniques and tested in ethanol steam reforming reaction to produce hydrogen. The catalytic behavior at 650 °C depended on the nature of rare earth. The amount of carbon on promoted catalysts was significantly lower than that on unpromoted one. The Pr and La containing catalysts produced a high acetaldehyde selectivity which decreased the hydrogen production. The superior performance of the catalyst promoted with 7.8% Ce could be partially explained by a higher dispersion and a high reduction of Co species.     

Synthesis of 1,1‐diethoxyethane using a continuous flow reactor: catalyst deactivation and effect of feed purity and of solvent addition

The synthesis of 1,1‐diethoxyethane from ethanol and acetaldehyde was studied in a continuous flow reactor using Amberlyst 15 as catalyst. The resin underwent an important activity loss with both analytical quality reagents and industrial raw materials. The deactivation was related to a deterioration in acidity as a consequence of sulfonic group hydration mainly promoted by water from reaction. A higher ethanol conversion and a lower deactivation rate at long time on‐stream were observed when n‐hexane was added to the feed. Copyright © 2004 Society of Chemical Industry     

Steam reforming of ethanol over bimetallic RhPt/La2O3: Long-term stability under favorable reaction conditions

Recently, the steam reforming of biofuels has been presented as a potential hydrogen source for fuel cells. Because this scenario represents an interesting opportunity for Colombia (South America), which produces large amounts of bioethanol, the steam reforming of ethanol was studied over a bimetallic RhPt/La₂O₃ catalyst under bulk mass transfer conditions. The effect of temperature and the initial concentrations of ethanol and water were evaluated at space velocities above 55,000 h⁻¹ to determine the conditions that maximize the H₂/CO ratio and reduce CH₄ production while maintaining 100% conversion of ethanol. These requirements were accomplished when 21 mol% H₂O and 3 mol% C₂H₅OH (steam/ethanol molar ratio = 7) were reacted at 600 °C. The catalyst stability was assessed under these reaction conditions during 120 h on stream, obtaining ethanol conversions above 99% during the entire test. The effect of both H₂ and air flows as catalyst regeneration treatments were evaluated after 44 and 67 h on stream, respectively. The results showed that H₂ treatment accelerated catalyst deactivation, and air regeneration increased both the catalyst stability and the H₂ selectivity while decreasing CH₄ generation. Fresh and spent catalyst samples were characterized by TEM/EDX, XPS, TPR, and TGA. Although the Rh and Pt in the fresh catalyst were completely reduced, the spent samples showed a partial oxidation of Rh and small amounts of carbonaceous residue. A possible Rh–Pt–Rh₂O₃ structure was proposed as the active site on the catalyst, which was regenerated by air treatment.     

Poly(ethylene glycol)-based stable isotope labeling reagents for the quantitative analysis of low molecular weight metabolites by LC-MS

Stable isotope labeling (SIL) in combination with liquid chromatography-mass spectrometry is one of the most widely used quantitative analytical methods due to its sensitivity and ability to deal with extremely complex biological samples. However, SIL methods for metabolite analysis are still often limited in terms of multiplexing, the chromatographic properties of the derivatized analytes, or their ionization efficiency. Here we describe a new family of reagents for the SIL of primary amine-containing compounds based on pentafluorophenyl-activated esters of 13C-containing poly(ethylene glycol) chains (PEG) that addresses these shortcomings. A sequential buildup of the PEG chain allowed the introduction of various numbers of 13C atoms opening extended multiplexing possibilities. The PEG derivatives of rather hydrophilic molecules such as amino acids and glutathione were successfully retained on a standard C18 reversed-phase column, and their identification was facilitated based on m/z values and retention times using extracted ion chromatograms. The mass increase due to PEG derivatization moved low molecular weight metabolite signals out of the often noisy, low m/z region of the mass spectra, which resulted in enhanced overall sensitivity and selectivity. Furthermore, elution at increased retention times resulted in efficient electrospray ionization due to the higher acetonitrile content in the mobile phase. The method was successfully applied to the quantification of intracellular amino acids and glutathione in a cellular model of human lung epithelium exposed to cigarette smoke-induced oxidative stress. It was shown that the concentration of most amino acids increased upon exposure of A549 cells to gas-phase cigarette smoke with respect to air control and cigarette smoke extract and that free thiol-containing species (e.g., glutathione) decreased although disulfide bond formation was not increased. These labeling reagents should also prove useful for the labeling of peptides and other compounds containing primary amine functionalities.     

A Functional Approach to External Graph Algorithms

Abstract. We present a new approach for designing external graph algorithms and use it to design simple, deterministic and randomized external algorithms for computing connected components, minimum spanning forests, bottleneck minimum spanning forests, maximal independent sets (randomized only), and maximal matchings in undirected graphs. Our I/ O bounds compete with those of previous approaches. We also introduce a semi-external model, in which the vertex set but not the edge set of a graph fits in main memory. In this model we give an improved connected components algorithm, using new results for external grouping and sorting with duplicates. Unlike previous approaches, ours is purely functional—without side effects—and is thus amenable to standard checkpointing and programming language optimization techniques. This is an important practical consideration for applications that may take hours to run.