Low-contrast lesion segmentation in advanced MRI experiments by time-domain Ricker-type wavelets and fuzzy 2-means

Automated suspicious region segmentation has become a crucial need for the experts dealing with numerous images containing contrast-based lesions in MRI. Not all solutions, however, are based on mathematical infrastructure or providing adequate flexibility. On the other hand, segmentation of low-contrast lesions is very challenging for researchers; therefore, advanced magnetic resonance imaging (MRI) experiments are not commonly used in researches. Given the need of repeatability and adaptability, we present an automated framework for intelligent segmentation of brain lesions by wavelet imaging and fuzzy 2-means. Besides the general use of the wavelets in image processing, which is edge detection; we employed the second-order Ricker-type wavelets as the core of our novel imaging framework for low-contrast lesion segmentation. We firstly introduced the mathematical basis of several Ricker wavelet functions, which are in symmetrical form satisfying finite-energy and admissibility conditions of mother wavelets. Afterwards, we investigated three types of Ricker wavelets to apply on our clinical dataset containing susceptibility-weighted (SW) and minimum intensity projection SW (mIP-SW) images with barely-visible lesions. Finally, we adjusted the system parameters of the wavelets for optimization and post-segmentation by fuzzy 2-means. According to the preliminary results of the clinical experiments we conducted, our framework provided 93.53% average dice score (DSC) for SWI by Ricker-3 and 92.56% for mIP-SWI by Ricker-2 wavelet, as the main performance criteria of segmentation. Despite the lack of SWI or mIP-SWI experiments in the public datasets, we tested our framework with BraTS 2012 training sets containing real images with visible lesions and achieved an average of 88.13% DSC with 11.66% standard deviation by re-optimized framework for whole lesion segmentation, which is one of the highest among other relevant researches. In detail, 87.52% DSC for LG datasets with 11.32% standard deviation; while 88.34% DSC for HG datasets with 11.77% standard deviation are calculated.

     

A genome scan for quantitative trait loci affecting milk somatic cell score in Israeli and Italian Holstein cows by means of selective DNA pooling with single- and multiple-marker mapping

Mastitis is an important and common dairy cattle disease affecting milk yield, quality, and consumer safety as well as cheese yields and quality. Animal welfare and residues of the antibiotics used to treat mastitis cause public concern. Considerable genetic variation may allow selection for increased resistance to mastitis. Because of high genetic correlation to milk somatic cell score (SCS), SCS can serve as a surrogate trait for mastitis resistance. The present study intended to identify quantitative trait loci (QTL) affecting SCS in Israeli and Italian Holstein dairy cattle (IsH and ItH, respectively), using selective DNA pooling with single and multiple marker mapping. Milk samples of 4,788 daughters of 6 IsH and 7 ItH sires were used to construct sire-family high- and low-tail pools, which were genotyped at 123 (IsH) and 133 (ItH) microsatellite markers. Shadow correction was used to obtain pool allele frequency estimates. Frequency difference between the tails and empirical standard error of D, SE(D), were used to obtain P-values. All markers significant by single marker mapping were also significant by multiple marker mapping, but not vice versa. Combining both populations, 22 QTL on 21 chromosomes were identified; all corresponded to previous reports in the literature. Confidence intervals were set by chi-squared drop method. Heterozygosity of QTL was estimated at 44.2%. Allele substitution effects ranged from 1,782 to 4,930 cells/mL in estimated breeding value somatic cell count units. Most (80%) of the observed variation in estimated breeding value somatic cell score could be explained by the QTL identified under the stringent criteria. The results found here can be used as a basis for further genome-wide association studies for the same trait.     

A longitudinal study of negative affect and self-perceived competence in young adolescents.

In a 4-wave, 2-year longitudinal design, the authors obtained measures of negative affect (NA) and self-perceived competence from 220 boys and 216 girls who were 7th graders at the beginning of this study. NA was operationalized as the common dimension underlying self-reports of depressive symptoms, anxiety symptoms, and negative emotions. Self-perceived competence consisted of 2 higher order constructs: a well-behaved/good-student factor and an attractive/athletic/popular factor. Structural equation modeling revealed very high stability estimates for all constructs. Nevertheless, self-perceived competence in the attractive/athletic/popular domain predicted changes in NA. Conversely, NA predicted changes in self-perceived competence in the well-behaved/good-student domain. The primacy of NA versus self-cognitions depends, in part, on the type of self-cognitions being examined. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Convolutional encoder state estimation

To estimate the convolutional encoder state from received data, one may use the inverse to the encoder G. However, channel errors make this method unreliable. We propose a method that uses the received data in the following way. We calculate the syndrome, and after a specific number of received syndrome values equal to zero, we expect that the corresponding received data is also error-free. The received data is then used to build the inverse and give an estimate for the encoder state. The method can be used in situations where knowledge of the encoder state helps the decoding process or for synchronization purposes. We analyze the performance of the described method with respect to state estimation error probability and the average time it takes before we can estimate the encoder state with a certain desired reliability     

Positive effects of allosteric modulators on the binding properties and the function of muscarinic acetylcholine receptors

Data are reviewed indicating that allosteric modulators can enhance the affinities of muscarinic receptors for their antagonists and agonists, that the enhancement of the affinity for agonists is relevant functionally, and that the allosterically induced conformational change also affects the interaction between the receptors and the G proteins.     

A method for selecting a site for a rural residency program

Urethral steinstrasse is rare and requires immediate intervention. The radiographic and cystoscopic findings in two patients with urethral steinstrasse are described.     

Solvability and error bounds for nonlinear circuits containing operational amplifiers

Although an operational amplifier is a nonlinear device, the existing methods of analysis of circuits with operational amplifiers view it as a linear element which possibly has an infinite gain. As a result, it is not clear to what extent the results thus obtained hold. In this paper we construct a general model of a (nonlinear) circuit containing operational amplifiers. Viewing such a network as an interconnection of a multiport withn operational amplifiers, we give conditions for solvability (i.e., for the existence of an input-output operator), and establish estimates for the error incurred by replacing such a system by an idealized system whose operational amplifiers have infinite gain. In this way we determine ranges for variables within which the traditional linear analysis gives results that fulfill given accuracy requirements.     

On a “central inequality” in the theory of input-output systems

In the stability and sensitivity theory of general, nonlinear input-output systems we encounter a certain inequality concerning solely the nominal system that plays a central role in the whole theory. In particular, this central inequality, combined with other assumptions, implies (a) stability of the nominal system, (b) robustness, and (c) insensitivity of the input-output system. This paper presents conditions equivalent to this central inequality, and a further result on the stability-robustness problem.     

Fatty acid esters of 3-chloropropane-1,2-diol in edible oils.

A series of 25 virgin and refined edible oils, obtained from retailers, was analyzed for levels of free 3-chloropropane-1,2-diol (3-MCPD) and 3-MCPD released from esters with higher fatty acids (bound 3-MCPD). Oils containing free 3-MCPD ranging from <3 microg kg-1 (LOD) to 24 microg kg-1. Surprisingly, bound 3-MCPD levels were much higher and varied between <100 (LOD) and 2462 microg kg-1. On average, virgin oils had relatively low levels of bound 3-MCPD, ranging from <100 (LOD) to <300 microg kg-1 (LOQ). Higher levels of bound 3-MCPD were found in oils from roasted oilseeds (337 microg kg-1) and in the majority of refined oils (<300-2462 microg kg-1), including refined olive oils. In general, it appears that the formation of bound 3-MCPD in oils is linked to preliminary heat treatment of oilseeds and to the process of oil refining. Analysis of unrefined, de-gummed, bleached, and deodorized rapeseed oil showed that the level of bound MCPD decreased during the refining process. However, additional heating of seed oils for 30 min at temperatures ranging from 100 to 280 degrees C, and heating at 230 degrees C (260 degrees C) for up to 8 h, led to an increase in bound 3-MCPD levels. On the other hand, heating of olive oil resulted in a decrease in bound 3-MCPD levels. For comparison, fat isolated from salami was analyzed for intact fatty acid esters of 3-MCPD. This fat contained bound 3-MCPD at a level of 1670 microg kg-1 and the fatty acid esters of 3-MCPD mainly consisted of 3-MCPD diesters; monoesters of 3-MCPD were present in smaller amounts. The major types of 3-MCPD diesters (about 85%) were mixed diesters of palmitic acid with C18 fatty acids (stearic, oleic, linoleic acids). These diesters were followed by 3-MCPD distearate (11%) and 3-MCPD dipalmitate (4%). Generally, very little 3-MCPD existed as the free compound (31 microg kg-1).